miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8894 5' -52.4 NC_002484.1 + 13139 0.66 0.854203
Target:  5'- aUCGGCAGCcuGCUGuuGAUaauccgUgGCCGu -3'
miRNA:   3'- -AGUUGUCGucCGACggCUAa-----AgUGGU- -5'
8894 5' -52.4 NC_002484.1 + 4032 0.66 0.836363
Target:  5'- -aGGCGGCGcGGCcgaUGCgGAUUUCAUCc -3'
miRNA:   3'- agUUGUCGU-CCG---ACGgCUAAAGUGGu -5'
8894 5' -52.4 NC_002484.1 + 26525 0.66 0.836363
Target:  5'- cCAGCcGCGGGCcagGCCGg---CACCu -3'
miRNA:   3'- aGUUGuCGUCCGa--CGGCuaaaGUGGu -5'
8894 5' -52.4 NC_002484.1 + 38228 0.66 0.817606
Target:  5'- ---cCGGCcGGC-GCCGAUaUCGCCGc -3'
miRNA:   3'- aguuGUCGuCCGaCGGCUAaAGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 26155 0.66 0.817606
Target:  5'- -gAACGGCAGGCaGCCaGAUccgCGCUc -3'
miRNA:   3'- agUUGUCGUCCGaCGG-CUAaa-GUGGu -5'
8894 5' -52.4 NC_002484.1 + 36716 0.66 0.807911
Target:  5'- cCAACGGCAGGCcGaCGAgcagGCCAg -3'
miRNA:   3'- aGUUGUCGUCCGaCgGCUaaagUGGU- -5'
8894 5' -52.4 NC_002484.1 + 39648 0.67 0.798018
Target:  5'- uUCAcuGCcaAGCAGGCaugaGCCGAUccgcugcggUCGCCAa -3'
miRNA:   3'- -AGU--UG--UCGUCCGa---CGGCUAa--------AGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 4444 0.67 0.767279
Target:  5'- gCGACAGCgccAGGCauaucgGUCGGggugUCACCAc -3'
miRNA:   3'- aGUUGUCG---UCCGa-----CGGCUaa--AGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 33352 0.68 0.713248
Target:  5'- gCGAguGCAucgaaGCUGCCGGcaUCACCAc -3'
miRNA:   3'- aGUUguCGUc----CGACGGCUaaAGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 3982 0.69 0.645725
Target:  5'- gCGGCAG-AGGCagccagGCCGAUgaugUUCACCGu -3'
miRNA:   3'- aGUUGUCgUCCGa-----CGGCUA----AAGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 42056 0.7 0.600282
Target:  5'- cUguACAGguGGCUcCCGGUaUUCACCGc -3'
miRNA:   3'- -AguUGUCguCCGAcGGCUA-AAGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 51988 0.71 0.529864
Target:  5'- gCAGCuuauGCAGccGCUGCCGAUggaaaguucguaggUUCGCCGg -3'
miRNA:   3'- aGUUGu---CGUC--CGACGGCUA--------------AAGUGGU- -5'
8894 5' -52.4 NC_002484.1 + 45172 0.72 0.468904
Target:  5'- aUCAGCGGCAGGC-GCCauUUUCugCc -3'
miRNA:   3'- -AGUUGUCGUCCGaCGGcuAAAGugGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.