miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8895 5' -51.9 NC_002484.1 + 8712 0.66 0.877831
Target:  5'- aUCGgGGuaGCGU-CAAGCAGCUGguaCUUCu -3'
miRNA:   3'- -AGCgCU--UGCGuGUUCGUUGACg--GAAG- -5'
8895 5' -51.9 NC_002484.1 + 10314 0.66 0.869752
Target:  5'- gCGCaGGcCGCGCAGGUAGC-GCCg-- -3'
miRNA:   3'- aGCG-CUuGCGUGUUCGUUGaCGGaag -5'
8895 5' -51.9 NC_002484.1 + 11187 0.66 0.869752
Target:  5'- gCGUaGAGCGCgGCGAGCAA-UGCCg-- -3'
miRNA:   3'- aGCG-CUUGCG-UGUUCGUUgACGGaag -5'
8895 5' -51.9 NC_002484.1 + 19985 0.66 0.869752
Target:  5'- gCGCGAcaGCGUGCcuGGUuGCUGCCg-- -3'
miRNA:   3'- aGCGCU--UGCGUGu-UCGuUGACGGaag -5'
8895 5' -51.9 NC_002484.1 + 4824 0.68 0.775973
Target:  5'- aUGCGAGcCGCGCAGGgAGCUGgUUa- -3'
miRNA:   3'- aGCGCUU-GCGUGUUCgUUGACgGAag -5'
8895 5' -51.9 NC_002484.1 + 14848 0.68 0.765528
Target:  5'- aUGUGGcaACGCGCAGGCGuuACgcGCUUUCg -3'
miRNA:   3'- aGCGCU--UGCGUGUUCGU--UGa-CGGAAG- -5'
8895 5' -51.9 NC_002484.1 + 26497 0.68 0.765528
Target:  5'- cCGCGGGCGCucGCAcggcacAGCAAUggGCaCUUCu -3'
miRNA:   3'- aGCGCUUGCG--UGU------UCGUUGa-CG-GAAG- -5'
8895 5' -51.9 NC_002484.1 + 1531 0.68 0.754937
Target:  5'- aUCGUGAAguCGCGCuucuGCcGCUGCCa-- -3'
miRNA:   3'- -AGCGCUU--GCGUGuu--CGuUGACGGaag -5'
8895 5' -51.9 NC_002484.1 + 48023 0.69 0.722411
Target:  5'- aUGCGAACGCGuCGGGgGAaaGCuCUUCg -3'
miRNA:   3'- aGCGCUUGCGU-GUUCgUUgaCG-GAAG- -5'
8895 5' -51.9 NC_002484.1 + 7193 0.69 0.71136
Target:  5'- -gGCGGACGgAUGAGCGACauccGCCgUUCg -3'
miRNA:   3'- agCGCUUGCgUGUUCGUUGa---CGG-AAG- -5'
8895 5' -51.9 NC_002484.1 + 35792 0.71 0.609614
Target:  5'- cUCGCGAGCGCGCcAAGC-GCUcCCa-- -3'
miRNA:   3'- -AGCGCUUGCGUG-UUCGuUGAcGGaag -5'
8895 5' -51.9 NC_002484.1 + 27918 0.71 0.586952
Target:  5'- aCG-GAGCGCACAGGCuggaUGCCggCg -3'
miRNA:   3'- aGCgCUUGCGUGUUCGuug-ACGGaaG- -5'
8895 5' -51.9 NC_002484.1 + 37894 0.72 0.542182
Target:  5'- cUCGCauuAAUGCcgGCAGGCGGCUGCCa-- -3'
miRNA:   3'- -AGCGc--UUGCG--UGUUCGUUGACGGaag -5'
8895 5' -51.9 NC_002484.1 + 41396 0.72 0.519123
Target:  5'- cCGCGAGCGCcuGCAAggaggggcguaauGCAACUGCUa-- -3'
miRNA:   3'- aGCGCUUGCG--UGUU-------------CGUUGACGGaag -5'
8895 5' -51.9 NC_002484.1 + 35369 0.74 0.435401
Target:  5'- -gGUGAGCGUgaucaucGCAGGCgAGCUGCCUUa -3'
miRNA:   3'- agCGCUUGCG-------UGUUCG-UUGACGGAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.