miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8899 3' -55.6 NC_002484.1 + 14594 0.66 0.685073
Target:  5'- -aGCGuGACCGGCucUCCGGcgucGAUGgccuCGGCa -3'
miRNA:   3'- aaCGU-CUGGCCG--AGGCCu---UUAC----GUCG- -5'
8899 3' -55.6 NC_002484.1 + 41718 0.66 0.68397
Target:  5'- -cGCAGGCCagugcaaGGCUCCaGAGAUaucGCuGGCc -3'
miRNA:   3'- aaCGUCUGG-------CCGAGGcCUUUA---CG-UCG- -5'
8899 3' -55.6 NC_002484.1 + 26563 0.66 0.651782
Target:  5'- -cGCGGACCuuGG-UCUGGAGAUcgucgcccuuccGCAGCc -3'
miRNA:   3'- aaCGUCUGG--CCgAGGCCUUUA------------CGUCG- -5'
8899 3' -55.6 NC_002484.1 + 5238 0.66 0.651782
Target:  5'- gUGCAGAUUGGCgCCGGucccguucccguAGA-GCAGUu -3'
miRNA:   3'- aACGUCUGGCCGaGGCC------------UUUaCGUCG- -5'
8899 3' -55.6 NC_002484.1 + 26311 0.66 0.645094
Target:  5'- -aGCAGGCguugGGCUCCGGcauacugcuccGCGGCc -3'
miRNA:   3'- aaCGUCUGg---CCGAGGCCuuua-------CGUCG- -5'
8899 3' -55.6 NC_002484.1 + 13571 0.66 0.640633
Target:  5'- -aGguG-CCGGuCUCCGGAA---CAGCa -3'
miRNA:   3'- aaCguCuGGCC-GAGGCCUUuacGUCG- -5'
8899 3' -55.6 NC_002484.1 + 26181 0.66 0.639517
Target:  5'- cUGCGGccuCCaGGCUCCcacgagcGGAAcgGCAGg -3'
miRNA:   3'- aACGUCu--GG-CCGAGG-------CCUUuaCGUCg -5'
8899 3' -55.6 NC_002484.1 + 45574 0.67 0.58497
Target:  5'- -aGCAGGucuauguuauCCGGaggCCGGAug-GCGGCg -3'
miRNA:   3'- aaCGUCU----------GGCCga-GGCCUuuaCGUCG- -5'
8899 3' -55.6 NC_002484.1 + 31565 0.68 0.519577
Target:  5'- -cGCAuGGCCGauaGCUuuGGGu-UGCAGCa -3'
miRNA:   3'- aaCGU-CUGGC---CGAggCCUuuACGUCG- -5'
8899 3' -55.6 NC_002484.1 + 33148 0.7 0.408518
Target:  5'- -aGCAGGCgGaGCggCCGGAGGUGguGg -3'
miRNA:   3'- aaCGUCUGgC-CGa-GGCCUUUACguCg -5'
8899 3' -55.6 NC_002484.1 + 24752 0.75 0.21232
Target:  5'- -gGCucgaGGGCCGGCgUUCGGGAggauAUGCAGCa -3'
miRNA:   3'- aaCG----UCUGGCCG-AGGCCUU----UACGUCG- -5'
8899 3' -55.6 NC_002484.1 + 8958 0.77 0.14862
Target:  5'- -aGCAGuuucuCCGGCUCCGGGAuGUGCuccaGGCu -3'
miRNA:   3'- aaCGUCu----GGCCGAGGCCUU-UACG----UCG- -5'
8899 3' -55.6 NC_002484.1 + 16406 0.8 0.088995
Target:  5'- -cGCGGACCGGCgaaauacuUCCGGGGcgGCAGg -3'
miRNA:   3'- aaCGUCUGGCCG--------AGGCCUUuaCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.