miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
89 3' -54.7 AC_000006.1 + 3453 0.67 0.576278
Target:  5'- gGCGGGgcCUuCGaAGGGGGGCUUUuuaGCCCu -3'
miRNA:   3'- -CGUCUa-GAcGC-UCCCCUUGAAG---CGGG- -5'
89 3' -54.7 AC_000006.1 + 10331 0.68 0.496079
Target:  5'- uCGGca-UGCuGGGGGAgacccggguugagcACUUCGCCCg -3'
miRNA:   3'- cGUCuagACGcUCCCCU--------------UGAAGCGGG- -5'
89 3' -54.7 AC_000006.1 + 12011 0.68 0.506797
Target:  5'- cGUAGGcccgacacagcuccUCgacGCuGAGGGGggUUUCGCuCCg -3'
miRNA:   3'- -CGUCU--------------AGa--CG-CUCCCCuuGAAGCG-GG- -5'
89 3' -54.7 AC_000006.1 + 12372 0.66 0.610172
Target:  5'- cGCGGG-CUGUGGGGcGuGCaggCGCCCg -3'
miRNA:   3'- -CGUCUaGACGCUCCcCuUGaa-GCGGG- -5'
89 3' -54.7 AC_000006.1 + 13344 0.69 0.447183
Target:  5'- uGCAGcgCgGCGcGGGGAugauGCUgauGCCCg -3'
miRNA:   3'- -CGUCuaGaCGCuCCCCU----UGAag-CGGG- -5'
89 3' -54.7 AC_000006.1 + 17275 0.66 0.644246
Target:  5'- uGCGGcAUCauCGAGGGGGuggccauCUUCGCgCg -3'
miRNA:   3'- -CGUC-UAGacGCUCCCCUu------GAAGCGgG- -5'
89 3' -54.7 AC_000006.1 + 25014 0.85 0.036106
Target:  5'- uGCaAGA-CUGCGGGGGGAACaucguUUCGCCCg -3'
miRNA:   3'- -CG-UCUaGACGCUCCCCUUG-----AAGCGGG- -5'
89 3' -54.7 AC_000006.1 + 30485 1.13 0.000358
Target:  5'- uGCAGAUCUGCGAGGGGAACUUCGCCCc -3'
miRNA:   3'- -CGUCUAGACGCUCCCCUUGAAGCGGG- -5'
89 3' -54.7 AC_000006.1 + 33768 0.74 0.220289
Target:  5'- gGUGGGUCUGUGcacuugcAGGGGcgUUUCGCCUg -3'
miRNA:   3'- -CGUCUAGACGC-------UCCCCuuGAAGCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.