miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8900 3' -53.1 NC_002484.1 + 18991 0.66 0.835243
Target:  5'- --cCGGUCAGauugacgGGGAACgAUGCcgGGCg -3'
miRNA:   3'- gcuGCCAGUCg------UUCUUGgUACGa-CCG- -5'
8900 3' -53.1 NC_002484.1 + 51024 0.67 0.787582
Target:  5'- -aGCGGUCGGCGcGAucgGCCucaaGCUuGGCg -3'
miRNA:   3'- gcUGCCAGUCGUuCU---UGGua--CGA-CCG- -5'
8900 3' -53.1 NC_002484.1 + 24865 0.67 0.787582
Target:  5'- --cCGGUCgauauugcGGUAAGGACC-UGCgGGCg -3'
miRNA:   3'- gcuGCCAG--------UCGUUCUUGGuACGaCCG- -5'
8900 3' -53.1 NC_002484.1 + 18908 0.67 0.766243
Target:  5'- -uACGGUCAGCGGuGAGCCGUcgacGUacuccaggacgccUGGCu -3'
miRNA:   3'- gcUGCCAGUCGUU-CUUGGUA----CG-------------ACCG- -5'
8900 3' -53.1 NC_002484.1 + 51857 0.68 0.735766
Target:  5'- -uGCGGUCGGCGAuGGCCuuccgcgccgGCUuGGCg -3'
miRNA:   3'- gcUGCCAGUCGUUcUUGGua--------CGA-CCG- -5'
8900 3' -53.1 NC_002484.1 + 34106 0.68 0.735766
Target:  5'- uGGCGGUguGaCGGucACCG-GCUGGCc -3'
miRNA:   3'- gCUGCCAguC-GUUcuUGGUaCGACCG- -5'
8900 3' -53.1 NC_002484.1 + 11426 0.68 0.714204
Target:  5'- cCGGCGcUCGGCGGcauCCAUGCcGGCc -3'
miRNA:   3'- -GCUGCcAGUCGUUcuuGGUACGaCCG- -5'
8900 3' -53.1 NC_002484.1 + 27350 0.68 0.703291
Target:  5'- uGGCuGGUCAGCGccGGcgUUccGCUGGCg -3'
miRNA:   3'- gCUG-CCAGUCGU--UCuuGGuaCGACCG- -5'
8900 3' -53.1 NC_002484.1 + 17394 0.68 0.691206
Target:  5'- uGuACGG-CAGCGGGAugccguccguaaaACCcUGCUGGUc -3'
miRNA:   3'- gC-UGCCaGUCGUUCU-------------UGGuACGACCG- -5'
8900 3' -53.1 NC_002484.1 + 5691 0.69 0.659044
Target:  5'- uGGCGGUCAGC--GAACCAgucacgaaaGCcucggGGCg -3'
miRNA:   3'- gCUGCCAGUCGuuCUUGGUa--------CGa----CCG- -5'
8900 3' -53.1 NC_002484.1 + 13015 0.72 0.505047
Target:  5'- aGACGcUCAGCGAGAGCC----UGGCg -3'
miRNA:   3'- gCUGCcAGUCGUUCUUGGuacgACCG- -5'
8900 3' -53.1 NC_002484.1 + 31498 0.78 0.209936
Target:  5'- uGGUGGUCAGCGAGGAUC-UGCUGGa -3'
miRNA:   3'- gCUGCCAGUCGUUCUUGGuACGACCg -5'
8900 3' -53.1 NC_002484.1 + 40591 0.81 0.150974
Target:  5'- aGACGGUCAGCGAGGGgCuguUGC-GGCg -3'
miRNA:   3'- gCUGCCAGUCGUUCUUgGu--ACGaCCG- -5'
8900 3' -53.1 NC_002484.1 + 31931 0.84 0.090387
Target:  5'- uGACGGUCAGCGAGGGgCuuuUGCUGGg -3'
miRNA:   3'- gCUGCCAGUCGUUCUUgGu--ACGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.