miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8902	5'	-54.3	NC_002484.1	+	41023	0.66	0.802138
	Target:  5'- cCGAAGGAGCGUGGgugaaggccuccgaCUACgacgcccucgccGCCGAggcccagGCGc -3' miRNA:   3'- -GCUUCCUUGCGCC--------------GAUG------------UGGCUa------CGC- -5'
8902	5'	-54.3	NC_002484.1	+	45508	0.66	0.765577
	Target:  5'- --cAGGAGCGUGGCUAauCCGuaGCGa -3' miRNA:   3'- gcuUCCUUGCGCCGAUguGGCuaCGC- -5'
8902	5'	-54.3	NC_002484.1	+	47218	0.67	0.759457
	Target:  5'- --cGGGAGaaacgcccagcucacCGCGGCUucCcCCGAUGCGg -3' miRNA:   3'- gcuUCCUU---------------GCGCCGAu-GuGGCUACGC- -5'
8902	5'	-54.3	NC_002484.1	+	33029	0.67	0.744999
	Target:  5'- uGgcGuGAGCGCGGCUGCGaggUGA-GCGa -3' miRNA:   3'- gCuuC-CUUGCGCCGAUGUg--GCUaCGC- -5'
8902	5'	-54.3	NC_002484.1	+	30407	0.67	0.702567
	Target:  5'- cCGGAGucGCuGCGcGCUACACguCGAUGUGg -3' miRNA:   3'- -GCUUCcuUG-CGC-CGAUGUG--GCUACGC- -5'
8902	5'	-54.3	NC_002484.1	+	27540	0.68	0.659036
	Target:  5'- aCGAAGGGGCGaUGGCaGCACUaaaGCGa -3' miRNA:   3'- -GCUUCCUUGC-GCCGaUGUGGcuaCGC- -5'
8902	5'	-54.3	NC_002484.1	+	25431	0.7	0.549811
	Target:  5'- aCGGAGGAucuAUcUGGCUcUGCCGGUGCGa -3' miRNA:   3'- -GCUUCCU---UGcGCCGAuGUGGCUACGC- -5'
8902	5'	-54.3	NC_002484.1	+	29996	0.71	0.517931
	Target:  5'- gCGGAGGGugGCugaGGCggcaACGCCGggGCc -3' miRNA:   3'- -GCUUCCUugCG---CCGa---UGUGGCuaCGc -5'
8902	5'	-54.3	NC_002484.1	+	4858	0.73	0.3994
	Target:  5'- uGGAGGugauggccgAGCGCGGCauggAUACgCGAUGCGa -3' miRNA:   3'- gCUUCC---------UUGCGCCGa---UGUG-GCUACGC- -5'
8902	5'	-54.3	NC_002484.1	+	4037	0.77	0.238324
	Target:  5'- --cAGGAAgGCGGCgcgGCCGAUGCGg -3' miRNA:   3'- gcuUCCUUgCGCCGaugUGGCUACGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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