miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8904 5' -51 NC_002484.1 + 14492 0.66 0.933013
Target:  5'- cGCGCuUCgggaucgaaACGU-CGAUAGCGCCa -3'
miRNA:   3'- uCGCGcAGaug------UGUAuGCUGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 28286 0.66 0.933013
Target:  5'- aAGC-CG-CUGCuaGCAUGCG-CGACGCg -3'
miRNA:   3'- -UCGcGCaGAUG--UGUAUGCuGUUGCGg -5'
8904 5' -51 NC_002484.1 + 49054 0.66 0.908522
Target:  5'- -cCGCGUCU-UGCu--CGAUGGCGCCg -3'
miRNA:   3'- ucGCGCAGAuGUGuauGCUGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 4844 0.66 0.908522
Target:  5'- gAGCGCGgcauggaUACGCgAUGCGAgCcGCGCa -3'
miRNA:   3'- -UCGCGCag-----AUGUG-UAUGCU-GuUGCGg -5'
8904 5' -51 NC_002484.1 + 35241 0.67 0.901681
Target:  5'- uGCGCGUC--CACc-GCGAUGAgGCCu -3'
miRNA:   3'- uCGCGCAGauGUGuaUGCUGUUgCGG- -5'
8904 5' -51 NC_002484.1 + 11198 0.68 0.863344
Target:  5'- cGUGCGUaUugGCGUagagcgcgGCGAgCAAUGCCg -3'
miRNA:   3'- uCGCGCAgAugUGUA--------UGCU-GUUGCGG- -5'
8904 5' -51 NC_002484.1 + 25866 0.68 0.846195
Target:  5'- cAGCGCG-CgGCGCuccuuaaucUGCuGCAACGCCa -3'
miRNA:   3'- -UCGCGCaGaUGUGu--------AUGcUGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 32852 0.68 0.828105
Target:  5'- cAGUcCGaCUACGCcUAUGACAACGaCCg -3'
miRNA:   3'- -UCGcGCaGAUGUGuAUGCUGUUGC-GG- -5'
8904 5' -51 NC_002484.1 + 32922 0.69 0.809152
Target:  5'- cAGCGCGaagaucgCUGCuCA-GCG-CGACGCCg -3'
miRNA:   3'- -UCGCGCa------GAUGuGUaUGCuGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 8366 0.69 0.789422
Target:  5'- -cCGCGUCa--GCGUGCuggaGCAGCGCCa -3'
miRNA:   3'- ucGCGCAGaugUGUAUGc---UGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 41971 0.69 0.779294
Target:  5'- uAGCGCGU--GCGCu--CGGCuuGCGCCc -3'
miRNA:   3'- -UCGCGCAgaUGUGuauGCUGu-UGCGG- -5'
8904 5' -51 NC_002484.1 + 19304 0.7 0.769006
Target:  5'- uGGCGCa--UGCACAUGCG---GCGCCc -3'
miRNA:   3'- -UCGCGcagAUGUGUAUGCuguUGCGG- -5'
8904 5' -51 NC_002484.1 + 36763 0.71 0.704606
Target:  5'- gAGCGUGa-UGCACA-GCGGC-GCGCCg -3'
miRNA:   3'- -UCGCGCagAUGUGUaUGCUGuUGCGG- -5'
8904 5' -51 NC_002484.1 + 38383 0.72 0.648783
Target:  5'- uGGCuGCGggauagCUGCACccggcaAUACGACGacauGCGCCg -3'
miRNA:   3'- -UCG-CGCa-----GAUGUG------UAUGCUGU----UGCGG- -5'
8904 5' -51 NC_002484.1 + 30001 0.72 0.637525
Target:  5'- gAGCuGCGgagggugGCugAgGCGGCAACGCCg -3'
miRNA:   3'- -UCG-CGCaga----UGugUaUGCUGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 11516 0.72 0.615004
Target:  5'- cAGCGCGgugaugcCUGcCGCAgu-GGCAGCGCCa -3'
miRNA:   3'- -UCGCGCa------GAU-GUGUaugCUGUUGCGG- -5'
8904 5' -51 NC_002484.1 + 8172 0.73 0.570226
Target:  5'- cGCGUGUCUGCACGccACu-CAGCGCg -3'
miRNA:   3'- uCGCGCAGAUGUGUa-UGcuGUUGCGg -5'
8904 5' -51 NC_002484.1 + 30397 0.74 0.494184
Target:  5'- uGCGCG-CUACACGU-CGAUGugGCa -3'
miRNA:   3'- uCGCGCaGAUGUGUAuGCUGUugCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.