Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8908 | 5' | -56.8 | NC_002484.1 | + | 30013 | 0.69 | 0.533054 |
Target: 5'- aCCGAccacGCAgagCUGCggaggguggcugaGGCGGcAACGCCGGg -3' miRNA: 3'- -GGCU----UGUa--GGCGg------------UCGCC-UUGCGGCC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 17408 | 0.69 | 0.516655 |
Target: 5'- cUCGGgccGCAUCauguaCGgCAGCGGGAUGCCGu -3' miRNA: 3'- -GGCU---UGUAG-----GCgGUCGCCUUGCGGCc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 33167 | 0.69 | 0.496449 |
Target: 5'- gCUGAAguUCUcaaGCCagagcaGGCGGAGCGgCCGGa -3' miRNA: 3'- -GGCUUguAGG---CGG------UCGCCUUGC-GGCC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 26833 | 0.7 | 0.427902 |
Target: 5'- uUCG-GC-UCCGCCGGcCGGAucgcugcAUGCCGGa -3' miRNA: 3'- -GGCuUGuAGGCGGUC-GCCU-------UGCGGCC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 42764 | 0.7 | 0.447608 |
Target: 5'- gCCaGGGCcugCCGCCGGUGGGcACGCUGu -3' miRNA: 3'- -GG-CUUGua-GGCGGUCGCCU-UGCGGCc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 36876 | 0.7 | 0.447608 |
Target: 5'- gCCGcgaAGCAgaagccaaggCCGCC-GCuGAGCGCCGGg -3' miRNA: 3'- -GGC---UUGUa---------GGCGGuCGcCUUGCGGCC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 6648 | 0.7 | 0.447608 |
Target: 5'- uCCGAugAcCaCGCUAgGCGGAAUGCCuGGc -3' miRNA: 3'- -GGCUugUaG-GCGGU-CGCCUUGCGG-CC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 2884 | 0.7 | 0.447608 |
Target: 5'- uUCGAcCAUCC---AGCGuGAACGCCGGg -3' miRNA: 3'- -GGCUuGUAGGcggUCGC-CUUGCGGCC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 42570 | 0.7 | 0.457168 |
Target: 5'- cCCGAGCAgaucgCCGCCgaggAGCGGGAgaagGCCa- -3' miRNA: 3'- -GGCUUGUa----GGCGG----UCGCCUUg---CGGcc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 13514 | 0.7 | 0.476608 |
Target: 5'- aCGAGCAacUCCGgCaaccauuggAGCGGuGAUGCCGGc -3' miRNA: 3'- gGCUUGU--AGGCgG---------UCGCC-UUGCGGCC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 8306 | 0.72 | 0.375405 |
Target: 5'- aCUGGAUGUCUGCCGGCGGgaguggaucgAugGCCc- -3' miRNA: 3'- -GGCUUGUAGGCGGUCGCC----------UugCGGcc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 19085 | 0.72 | 0.342376 |
Target: 5'- gCCGAuCAUCCcggcGCCAGCGcuGGugGCCaGGg -3' miRNA: 3'- -GGCUuGUAGG----CGGUCGC--CUugCGG-CC- -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 36766 | 0.73 | 0.319013 |
Target: 5'- gCUGAGCGUgaUGCaCAGCGGcGCGCCGa -3' miRNA: 3'- -GGCUUGUAg-GCG-GUCGCCuUGCGGCc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 26096 | 0.73 | 0.289755 |
Target: 5'- gCCGAGCcagacaCCGCCGGCGG--UGCCGa -3' miRNA: 3'- -GGCUUGua----GGCGGUCGCCuuGCGGCc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 49516 | 0.74 | 0.269223 |
Target: 5'- uCCGAACGUCCGgcgugcuuCCGgucauguuGCGGAGCGCUGu -3' miRNA: 3'- -GGCUUGUAGGC--------GGU--------CGCCUUGCGGCc -5' |
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8908 | 5' | -56.8 | NC_002484.1 | + | 10901 | 0.74 | 0.256197 |
Target: 5'- gCCGGugAUAUCUGCCGGCGuGAAUaCCGGc -3' miRNA: 3'- -GGCU--UGUAGGCGGUCGC-CUUGcGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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