miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8912 3' -55.9 NC_002484.1 + 903 0.66 0.738447
Target:  5'- uGGUGGcGCCGGAguaGaCC-UCGGCcCCCg -3'
miRNA:   3'- -CCAUC-UGGUCUug-C-GGaAGCCGcGGG- -5'
8912 3' -55.9 NC_002484.1 + 36621 0.66 0.717588
Target:  5'- uGgcGGCCcuGAuCGCCggCGGCauGCCCg -3'
miRNA:   3'- cCauCUGGu-CUuGCGGaaGCCG--CGGG- -5'
8912 3' -55.9 NC_002484.1 + 37784 0.67 0.679274
Target:  5'- cGGUGaaaacauGCCAuGAACGCgaagcguaaagccacCUuccUCGGCGCCCu -3'
miRNA:   3'- -CCAUc------UGGU-CUUGCG---------------GA---AGCCGCGGG- -5'
8912 3' -55.9 NC_002484.1 + 51855 0.67 0.664195
Target:  5'- cGGUcGGC--GAugGCCUUCcGCGCCg -3'
miRNA:   3'- -CCAuCUGguCUugCGGAAGcCGCGGg -5'
8912 3' -55.9 NC_002484.1 + 795 0.67 0.664195
Target:  5'- cGUAGGCCucgcGGAaccuGCGCUUgcCGGUGUCCc -3'
miRNA:   3'- cCAUCUGG----UCU----UGCGGAa-GCCGCGGG- -5'
8912 3' -55.9 NC_002484.1 + 35433 0.67 0.619808
Target:  5'- ----cGCCGGAugGCCUagUCGGCgacaacgGCCUg -3'
miRNA:   3'- ccaucUGGUCUugCGGA--AGCCG-------CGGG- -5'
8912 3' -55.9 NC_002484.1 + 6548 0.68 0.567035
Target:  5'- uGGcAGGCCu---CGUCUUCGGC-CCCu -3'
miRNA:   3'- -CCaUCUGGucuuGCGGAAGCCGcGGG- -5'
8912 3' -55.9 NC_002484.1 + 16579 0.69 0.535269
Target:  5'- aGGUGccACCAGAccgAUGCCg--GGUGCCCg -3'
miRNA:   3'- -CCAUc-UGGUCU---UGCGGaagCCGCGGG- -5'
8912 3' -55.9 NC_002484.1 + 47661 0.69 0.528988
Target:  5'- uGUcGACCGGAACGCCagucUCgcucacggaguugguGGCGCUCu -3'
miRNA:   3'- cCAuCUGGUCUUGCGGa---AG---------------CCGCGGG- -5'
8912 3' -55.9 NC_002484.1 + 34005 0.7 0.49395
Target:  5'- --aAGcCCAGGGCGCCgaaGGCGUUCu -3'
miRNA:   3'- ccaUCuGGUCUUGCGGaagCCGCGGG- -5'
8912 3' -55.9 NC_002484.1 + 8621 0.7 0.473841
Target:  5'- --cAGACCAGAGCagGCagUCGGUcaGCCCa -3'
miRNA:   3'- ccaUCUGGUCUUG--CGgaAGCCG--CGGG- -5'
8912 3' -55.9 NC_002484.1 + 27125 0.71 0.438723
Target:  5'- aGGUGGugCggacGGAgagacucgaacucucACGCCUUgCGGCGCUg -3'
miRNA:   3'- -CCAUCugG----UCU---------------UGCGGAA-GCCGCGGg -5'
8912 3' -55.9 NC_002484.1 + 4723 0.71 0.425472
Target:  5'- cGUuGGCCAGcAugGCUUguuccgCGGCGCUCa -3'
miRNA:   3'- cCAuCUGGUC-UugCGGAa-----GCCGCGGG- -5'
8912 3' -55.9 NC_002484.1 + 44489 0.73 0.314692
Target:  5'- ---cGGCCAGGACGUgggCGGCGCCg -3'
miRNA:   3'- ccauCUGGUCUUGCGgaaGCCGCGGg -5'
8912 3' -55.9 NC_002484.1 + 26110 0.73 0.313929
Target:  5'- cGGUAGugccgcgcgccgaGCCAGAcacCGCCggCGGUGCCg -3'
miRNA:   3'- -CCAUC-------------UGGUCUu--GCGGaaGCCGCGGg -5'
8912 3' -55.9 NC_002484.1 + 19062 0.74 0.299714
Target:  5'- uGGUGG-CCAGggUGUCUUgCaGCGUCCg -3'
miRNA:   3'- -CCAUCuGGUCuuGCGGAA-GcCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.