miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8913 3' -59.3 NC_002484.1 + 41289 0.66 0.488325
Target:  5'- cUUCGGGCGGCAGgACgUCGaugcagacgaCUGGCUg -3'
miRNA:   3'- aAGGCUCGUCGUCgUGaAGC----------GGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 44289 0.66 0.478254
Target:  5'- -gUCGAGUucGCAGUACUcCGCCaacGCCg -3'
miRNA:   3'- aaGGCUCGu-CGUCGUGAaGCGGc--CGG- -5'
8913 3' -59.3 NC_002484.1 + 17011 0.66 0.478254
Target:  5'- aUCCGAuaGC-GCAGC-CcaCGCgGGCCg -3'
miRNA:   3'- aAGGCU--CGuCGUCGuGaaGCGgCCGG- -5'
8913 3' -59.3 NC_002484.1 + 14740 0.66 0.475253
Target:  5'- -gCCGcagcGCGGCGGUAUUgaugaggucguaguaGCCGGCCu -3'
miRNA:   3'- aaGGCu---CGUCGUCGUGAag-------------CGGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 5032 0.67 0.429534
Target:  5'- cUUCCGAaacaGgAGCGGCAUUguugacgaaGCCGGUCu -3'
miRNA:   3'- -AAGGCU----CgUCGUCGUGAag-------CGGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 6691 0.67 0.410878
Target:  5'- cUUCGGG-AGCAGC-CUgauaGCUGGCCu -3'
miRNA:   3'- aAGGCUCgUCGUCGuGAag--CGGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 18055 0.67 0.392734
Target:  5'- -gCCGGGCAgGCGGCACUggacgguaucuUCGauCCaGCCg -3'
miRNA:   3'- aaGGCUCGU-CGUCGUGA-----------AGC--GGcCGG- -5'
8913 3' -59.3 NC_002484.1 + 12539 0.68 0.366513
Target:  5'- cUUCUuAGCAGCAGCuugggcuuCUUCcCCGGCg -3'
miRNA:   3'- -AAGGcUCGUCGUCGu-------GAAGcGGCCGg -5'
8913 3' -59.3 NC_002484.1 + 40422 0.7 0.274099
Target:  5'- -cCUGuGUGGCGGCGCUgcuuUCGUCgGGCCg -3'
miRNA:   3'- aaGGCuCGUCGUCGUGA----AGCGG-CCGG- -5'
8913 3' -59.3 NC_002484.1 + 2250 0.7 0.260645
Target:  5'- -gCCGAGCcccAGCAGCACgaagguuCCGGCUa -3'
miRNA:   3'- aaGGCUCG---UCGUCGUGaagc---GGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 11523 0.7 0.254122
Target:  5'- ---aGAGCGGCAGCGCggugaUGCCuGCCg -3'
miRNA:   3'- aaggCUCGUCGUCGUGaa---GCGGcCGG- -5'
8913 3' -59.3 NC_002484.1 + 4672 0.7 0.247733
Target:  5'- -cCUGGGCAGuCAGCAgUUCGUCGaCCu -3'
miRNA:   3'- aaGGCUCGUC-GUCGUgAAGCGGCcGG- -5'
8913 3' -59.3 NC_002484.1 + 11433 0.72 0.206675
Target:  5'- uUUCCGAccggcGCucGGCGGCAUccaUGCCGGCCa -3'
miRNA:   3'- -AAGGCU-----CG--UCGUCGUGaa-GCGGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 26454 0.72 0.196075
Target:  5'- -aCCGuGC-GCGGCucgGCUUCcuGCCGGCCg -3'
miRNA:   3'- aaGGCuCGuCGUCG---UGAAG--CGGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 34930 0.72 0.190955
Target:  5'- cUCUGAuCAGCAGguUcaagCGCCGGCCa -3'
miRNA:   3'- aAGGCUcGUCGUCguGaa--GCGGCCGG- -5'
8913 3' -59.3 NC_002484.1 + 29586 0.73 0.158309
Target:  5'- --aCGAGguGCuGCGCaggUUCGCCGGCg -3'
miRNA:   3'- aagGCUCguCGuCGUG---AAGCGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.