miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8917 3' -60.3 NC_002484.1 + 8943 0.71 0.218532
Target:  5'- uCCGGGaugUGCuccaGGCUGUCCCaGCAgGUCACg -3'
miRNA:   3'- cGGCCC---ACG----UCGAUAGGG-CGU-CGGUG- -5'
8917 3' -60.3 NC_002484.1 + 13346 0.67 0.365792
Target:  5'- aGCCuGG-GCAGCUuUCCCGCucaCCAg -3'
miRNA:   3'- -CGGcCCaCGUCGAuAGGGCGuc-GGUg -5'
8917 3' -60.3 NC_002484.1 + 16015 0.69 0.28754
Target:  5'- -aCGGGUgaacgucgugGCAGCagUAUCCCGgagaguucgcaguCAGCCACg -3'
miRNA:   3'- cgGCCCA----------CGUCG--AUAGGGC-------------GUCGGUG- -5'
8917 3' -60.3 NC_002484.1 + 31641 0.67 0.382931
Target:  5'- gGCCuGG-GCAaCUAUCUacaGCAGCCAUg -3'
miRNA:   3'- -CGGcCCaCGUcGAUAGGg--CGUCGGUG- -5'
8917 3' -60.3 NC_002484.1 + 35151 0.66 0.418772
Target:  5'- uGCUGGGggugGCAGCaugagaaCCGUacucaaAGCCACa -3'
miRNA:   3'- -CGGCCCa---CGUCGauag---GGCG------UCGGUG- -5'
8917 3' -60.3 NC_002484.1 + 41453 0.66 0.427113
Target:  5'- aGCCGGGgccGUGGCUAUcacguacCCCGaCGGCguaGCa -3'
miRNA:   3'- -CGGCCCa--CGUCGAUA-------GGGC-GUCGg--UG- -5'
8917 3' -60.3 NC_002484.1 + 55000 0.7 0.242054
Target:  5'- gGCCaGGGaGCGGCU-UCCCGUugcuGUCACa -3'
miRNA:   3'- -CGG-CCCaCGUCGAuAGGGCGu---CGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.