miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8918 5' -56.3 NC_002484.1 + 25856 0.66 0.622253
Target:  5'- cGCUCCUUAaucuGCugCAACGCCaccaGGUCc -3'
miRNA:   3'- uUGAGGGAUc---CGugGUUGUGGa---CCAG- -5'
8918 5' -56.3 NC_002484.1 + 19078 0.66 0.622253
Target:  5'- --aUCCC--GGCGCCAGCG-CUGGUg -3'
miRNA:   3'- uugAGGGauCCGUGGUUGUgGACCAg -5'
8918 5' -56.3 NC_002484.1 + 5564 0.66 0.607785
Target:  5'- gAugUCCaugcggucgaagauCUGGGCGCCGagagagacGCACC-GGUCa -3'
miRNA:   3'- -UugAGG--------------GAUCCGUGGU--------UGUGGaCCAG- -5'
8918 5' -56.3 NC_002484.1 + 34010 0.66 0.577875
Target:  5'- cAACcaagCCCaGGGCGCCGAaggcguUCUGGUCu -3'
miRNA:   3'- -UUGa---GGGaUCCGUGGUUgu----GGACCAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.