Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8918 | 5' | -56.3 | NC_002484.1 | + | 25856 | 0.66 | 0.622253 |
Target: 5'- cGCUCCUUAaucuGCugCAACGCCaccaGGUCc -3' miRNA: 3'- uUGAGGGAUc---CGugGUUGUGGa---CCAG- -5' |
|||||||
8918 | 5' | -56.3 | NC_002484.1 | + | 19078 | 0.66 | 0.622253 |
Target: 5'- --aUCCC--GGCGCCAGCG-CUGGUg -3' miRNA: 3'- uugAGGGauCCGUGGUUGUgGACCAg -5' |
|||||||
8918 | 5' | -56.3 | NC_002484.1 | + | 5564 | 0.66 | 0.607785 |
Target: 5'- gAugUCCaugcggucgaagauCUGGGCGCCGagagagacGCACC-GGUCa -3' miRNA: 3'- -UugAGG--------------GAUCCGUGGU--------UGUGGaCCAG- -5' |
|||||||
8918 | 5' | -56.3 | NC_002484.1 | + | 34010 | 0.66 | 0.577875 |
Target: 5'- cAACcaagCCCaGGGCGCCGAaggcguUCUGGUCu -3' miRNA: 3'- -UUGa---GGGaUCCGUGGUUgu----GGACCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home