Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8919 | 5' | -59.5 | NC_002484.1 | + | 15213 | 0.66 | 0.495049 |
Target: 5'- cUCGCUCcacgauuGAUGCUGCGGCAgaugacaacGCCUCa -3' miRNA: 3'- cAGCGAGu------CUGCGGCGUUGU---------CGGGGa -5' |
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8919 | 5' | -59.5 | NC_002484.1 | + | 48766 | 0.66 | 0.475002 |
Target: 5'- cGUCGCUCAcggcgaucuuGGCGUCGCGG-AGCUUCa -3' miRNA: 3'- -CAGCGAGU----------CUGCGGCGUUgUCGGGGa -5' |
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8919 | 5' | -59.5 | NC_002484.1 | + | 25962 | 0.68 | 0.34776 |
Target: 5'- -aUGCUCAcGCugGCCGUAAcCAGCCCCc -3' miRNA: 3'- caGCGAGUcUG--CGGCGUU-GUCGGGGa -5' |
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8919 | 5' | -59.5 | NC_002484.1 | + | 43040 | 0.68 | 0.339652 |
Target: 5'- aUCGCagCAGGCuaCGCAGCagaAGCCCUUg -3' miRNA: 3'- cAGCGa-GUCUGcgGCGUUG---UCGGGGA- -5' |
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8919 | 5' | -59.5 | NC_002484.1 | + | 3351 | 0.7 | 0.272906 |
Target: 5'- -cCGCUCGGGCGCaguUAGCAGCCgCUu -3' miRNA: 3'- caGCGAGUCUGCGgc-GUUGUCGGgGA- -5' |
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8919 | 5' | -59.5 | NC_002484.1 | + | 18561 | 0.71 | 0.222784 |
Target: 5'- cGUCGCgcgaaCGGACGCCGCggUAuuGCCgCUg -3' miRNA: 3'- -CAGCGa----GUCUGCGGCGuuGU--CGGgGA- -5' |
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8919 | 5' | -59.5 | NC_002484.1 | + | 35929 | 0.72 | 0.190519 |
Target: 5'- --aGCUCAGGCGCaGCAACugaaAGCCCUUc -3' miRNA: 3'- cagCGAGUCUGCGgCGUUG----UCGGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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