miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8921 5' -55.4 NC_002484.1 + 6380 0.66 0.664383
Target:  5'- uUGAUCAUCucgauuGUCGgguuguugcgcuUCAGGCGCUCg -3'
miRNA:   3'- uACUAGUGGcau---CGGU------------AGUCCGCGAG- -5'
8921 5' -55.4 NC_002484.1 + 31516 0.66 0.686613
Target:  5'- -aGAUCcCCGcaGGCCAUguGGUGgUCa -3'
miRNA:   3'- uaCUAGuGGCa-UCGGUAguCCGCgAG- -5'
8921 5' -55.4 NC_002484.1 + 49022 0.68 0.55303
Target:  5'- -aGGUCGCUG-AGCac-CGGGCGCUUa -3'
miRNA:   3'- uaCUAGUGGCaUCGguaGUCCGCGAG- -5'
8921 5' -55.4 NC_002484.1 + 11767 0.69 0.48872
Target:  5'- cUGGUCugCGgucacGCCAacuUUAGGCGCUa -3'
miRNA:   3'- uACUAGugGCau---CGGU---AGUCCGCGAg -5'
8921 5' -55.4 NC_002484.1 + 40981 0.7 0.447849
Target:  5'- ----cCGCCGaGGCC--CAGGCGCUCa -3'
miRNA:   3'- uacuaGUGGCaUCGGuaGUCCGCGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.