miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8923 5' -50.6 NC_002484.1 + 1564 0.66 0.920402
Target:  5'- ----aGCCAUCCAG-CAGCGGcagccUGCCa -3'
miRNA:   3'- gcaagUGGUGGGUCaGUUGCUu----ACGG- -5'
8923 5' -50.6 NC_002484.1 + 1826 0.74 0.546127
Target:  5'- aGUUgGCCugCCAGUCGuCGAagGCa -3'
miRNA:   3'- gCAAgUGGugGGUCAGUuGCUuaCGg -5'
8923 5' -50.6 NC_002484.1 + 4880 0.67 0.90059
Target:  5'- aGggCGCCGCCagagccGUCGAUGGAggugaugGCCg -3'
miRNA:   3'- gCaaGUGGUGGgu----CAGUUGCUUa------CGG- -5'
8923 5' -50.6 NC_002484.1 + 5399 0.71 0.735488
Target:  5'- uCGaUCAgCGCCCAGUCGAUGGGguugaGCa -3'
miRNA:   3'- -GCaAGUgGUGGGUCAGUUGCUUa----CGg -5'
8923 5' -50.6 NC_002484.1 + 7507 0.66 0.937614
Target:  5'- uCGggCGaUAUCCAGcgAGCGAAUGCCa -3'
miRNA:   3'- -GCaaGUgGUGGGUCagUUGCUUACGG- -5'
8923 5' -50.6 NC_002484.1 + 19005 0.68 0.862014
Target:  5'- cCG-UCGCCcaguuCCCGGUCAgauugacggggaACG-AUGCCg -3'
miRNA:   3'- -GCaAGUGGu----GGGUCAGU------------UGCuUACGG- -5'
8923 5' -50.6 NC_002484.1 + 19260 0.77 0.392787
Target:  5'- ---aCGCCGCCCAGUCGAU-AGUGUCg -3'
miRNA:   3'- gcaaGUGGUGGGUCAGUUGcUUACGG- -5'
8923 5' -50.6 NC_002484.1 + 30700 0.69 0.807565
Target:  5'- ---cCGCCACCCcaaaUCAACGAAUccGCCc -3'
miRNA:   3'- gcaaGUGGUGGGuc--AGUUGCUUA--CGG- -5'
8923 5' -50.6 NC_002484.1 + 34116 0.67 0.893418
Target:  5'- --aUCACCGCCCuggcggugugacGGUCAcCGGcugGCCu -3'
miRNA:   3'- gcaAGUGGUGGG------------UCAGUuGCUua-CGG- -5'
8923 5' -50.6 NC_002484.1 + 35436 0.73 0.590548
Target:  5'- -aUUCGCCggaugGCCUAGUCGGCGAcaacgGCCu -3'
miRNA:   3'- gcAAGUGG-----UGGGUCAGUUGCUua---CGG- -5'
8923 5' -50.6 NC_002484.1 + 37806 0.66 0.920402
Target:  5'- uCGUUCuguguGCCGCgCAGaUCggUGAaaacAUGCCa -3'
miRNA:   3'- -GCAAG-----UGGUGgGUC-AGuuGCU----UACGG- -5'
8923 5' -50.6 NC_002484.1 + 40083 0.69 0.807565
Target:  5'- ---cCGCCACCCcaaaUCAACGAAUccGCCc -3'
miRNA:   3'- gcaaGUGGUGGGuc--AGUUGCUUA--CGG- -5'
8923 5' -50.6 NC_002484.1 + 45787 0.69 0.797753
Target:  5'- aGUaCACUGCCCg--CGGCGAGUGCg -3'
miRNA:   3'- gCAaGUGGUGGGucaGUUGCUUACGg -5'
8923 5' -50.6 NC_002484.1 + 55386 0.7 0.777597
Target:  5'- --aUCACCAUCC--UCGGCGAGcGCCu -3'
miRNA:   3'- gcaAGUGGUGGGucAGUUGCUUaCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.