Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8923 | 5' | -50.6 | NC_002484.1 | + | 19260 | 0.77 | 0.392787 |
Target: 5'- ---aCGCCGCCCAGUCGAU-AGUGUCg -3' miRNA: 3'- gcaaGUGGUGGGUCAGUUGcUUACGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 37806 | 0.66 | 0.920402 |
Target: 5'- uCGUUCuguguGCCGCgCAGaUCggUGAaaacAUGCCa -3' miRNA: 3'- -GCAAG-----UGGUGgGUC-AGuuGCU----UACGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 1564 | 0.66 | 0.920402 |
Target: 5'- ----aGCCAUCCAG-CAGCGGcagccUGCCa -3' miRNA: 3'- gcaagUGGUGGGUCaGUUGCUu----ACGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 4880 | 0.67 | 0.90059 |
Target: 5'- aGggCGCCGCCagagccGUCGAUGGAggugaugGCCg -3' miRNA: 3'- gCaaGUGGUGGgu----CAGUUGCUUa------CGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 34116 | 0.67 | 0.893418 |
Target: 5'- --aUCACCGCCCuggcggugugacGGUCAcCGGcugGCCu -3' miRNA: 3'- gcaAGUGGUGGG------------UCAGUuGCUua-CGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 19005 | 0.68 | 0.862014 |
Target: 5'- cCG-UCGCCcaguuCCCGGUCAgauugacggggaACG-AUGCCg -3' miRNA: 3'- -GCaAGUGGu----GGGUCAGU------------UGCuUACGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 30700 | 0.69 | 0.807565 |
Target: 5'- ---cCGCCACCCcaaaUCAACGAAUccGCCc -3' miRNA: 3'- gcaaGUGGUGGGuc--AGUUGCUUA--CGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 40083 | 0.69 | 0.807565 |
Target: 5'- ---cCGCCACCCcaaaUCAACGAAUccGCCc -3' miRNA: 3'- gcaaGUGGUGGGuc--AGUUGCUUA--CGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 45787 | 0.69 | 0.797753 |
Target: 5'- aGUaCACUGCCCg--CGGCGAGUGCg -3' miRNA: 3'- gCAaGUGGUGGGucaGUUGCUUACGg -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 55386 | 0.7 | 0.777597 |
Target: 5'- --aUCACCAUCC--UCGGCGAGcGCCu -3' miRNA: 3'- gcaAGUGGUGGGucAGUUGCUUaCGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 5399 | 0.71 | 0.735488 |
Target: 5'- uCGaUCAgCGCCCAGUCGAUGGGguugaGCa -3' miRNA: 3'- -GCaAGUgGUGGGUCAGUUGCUUa----CGg -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 35436 | 0.73 | 0.590548 |
Target: 5'- -aUUCGCCggaugGCCUAGUCGGCGAcaacgGCCu -3' miRNA: 3'- gcAAGUGG-----UGGGUCAGUUGCUua---CGG- -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 1826 | 0.74 | 0.546127 |
Target: 5'- aGUUgGCCugCCAGUCGuCGAagGCa -3' miRNA: 3'- gCAAgUGGugGGUCAGUuGCUuaCGg -5' |
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8923 | 5' | -50.6 | NC_002484.1 | + | 7507 | 0.66 | 0.937614 |
Target: 5'- uCGggCGaUAUCCAGcgAGCGAAUGCCa -3' miRNA: 3'- -GCaaGUgGUGGGUCagUUGCUUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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