miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8924 5' -44.5 NC_002484.1 + 15333 0.73 0.893018
Target:  5'- cUGGCGGgAUAUGC-CAUGCAGAAu- -3'
miRNA:   3'- uAUCGUUgUAUAUGuGUGCGUCUUua -5'
8924 5' -44.5 NC_002484.1 + 44170 0.66 0.998113
Target:  5'- -cAGUAGCAaGU-CGCGCGCAaGAGAg -3'
miRNA:   3'- uaUCGUUGUaUAuGUGUGCGU-CUUUa -5'
8924 5' -44.5 NC_002484.1 + 43038 0.67 0.995875
Target:  5'- --cGCAGCAggcUACGCA-GCAGAAGc -3'
miRNA:   3'- uauCGUUGUau-AUGUGUgCGUCUUUa -5'
8924 5' -44.5 NC_002484.1 + 7939 0.67 0.995063
Target:  5'- uUGGguGCAUGaACGCACGCAu---- -3'
miRNA:   3'- uAUCguUGUAUaUGUGUGCGUcuuua -5'
8924 5' -44.5 NC_002484.1 + 40510 0.67 0.994126
Target:  5'- gAUGGCugccGCAUGUGCGCGagacgguaGCGGAAc- -3'
miRNA:   3'- -UAUCGu---UGUAUAUGUGUg-------CGUCUUua -5'
8924 5' -44.5 NC_002484.1 + 4841 0.67 0.99305
Target:  5'- --cGCGGCAUggAUACGCgaugcgagccGCGCAGGGAg -3'
miRNA:   3'- uauCGUUGUA--UAUGUG----------UGCGUCUUUa -5'
8924 5' -44.5 NC_002484.1 + 37812 0.68 0.990428
Target:  5'- -aGGCAAUcguucuGUGUGC-CGCGCAGAu-- -3'
miRNA:   3'- uaUCGUUG------UAUAUGuGUGCGUCUuua -5'
8924 5' -44.5 NC_002484.1 + 14114 0.7 0.964299
Target:  5'- cUGGCGGCA--UACGCACGCAa---- -3'
miRNA:   3'- uAUCGUUGUauAUGUGUGCGUcuuua -5'
8924 5' -44.5 NC_002484.1 + 30046 0.71 0.944853
Target:  5'- gGUAGCAACuggacuucgagGUACGCACGCAuGAc-- -3'
miRNA:   3'- -UAUCGUUGua---------UAUGUGUGCGU-CUuua -5'
8924 5' -44.5 NC_002484.1 + 26042 0.66 0.998474
Target:  5'- --cGCGACcgAUaaaGCGCGgGCGGAGAUc -3'
miRNA:   3'- uauCGUUGuaUA---UGUGUgCGUCUUUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.