Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8925 | 3' | -47.5 | NC_002484.1 | + | 16404 | 0.66 | 0.989842 |
Target: 5'- -cGGACCGG---CGAAAuacuuccggGGCgGCAGGa -3' miRNA: 3'- uuUCUGGCCuuuGCUUU---------UUGgCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 18400 | 0.66 | 0.98337 |
Target: 5'- ---cGCCGGAuauccacCGGAAAccguuccgucugggcGCCGCAGGu -3' miRNA: 3'- uuucUGGCCUuu-----GCUUUU---------------UGGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 42812 | 0.66 | 0.986549 |
Target: 5'- -cAGAgCGuGAAGCGAcauucgaagcGAGACCGCAa- -3' miRNA: 3'- uuUCUgGC-CUUUGCU----------UUUUGGCGUcc -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 24878 | 0.66 | 0.987783 |
Target: 5'- cAAAG-CCGGAAuaccggucgauauuGCGGuaAGGACCuGCGGGc -3' miRNA: 3'- -UUUCuGGCCUU--------------UGCU--UUUUGG-CGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 3019 | 0.66 | 0.98812 |
Target: 5'- -cAGGCUGGAGAaugcgaucaaccuUGAAugcGACCGUGGGu -3' miRNA: 3'- uuUCUGGCCUUU-------------GCUUu--UUGGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 18248 | 0.66 | 0.989842 |
Target: 5'- cAGGGCCGGGAACauc--GCCGgcaAGGg -3' miRNA: 3'- uUUCUGGCCUUUGcuuuuUGGCg--UCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 6872 | 0.67 | 0.980148 |
Target: 5'- --uGACCGGAGAac-AGAACCGUcucccAGGu -3' miRNA: 3'- uuuCUGGCCUUUgcuUUUUGGCG-----UCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 24972 | 0.67 | 0.980148 |
Target: 5'- --uGACCGGAGuCGAGAucGACgGCAc- -3' miRNA: 3'- uuuCUGGCCUUuGCUUU--UUGgCGUcc -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 37121 | 0.67 | 0.980148 |
Target: 5'- cGAGGACUGGGAA-GAguucGAAACCG-AGGc -3' miRNA: 3'- -UUUCUGGCCUUUgCU----UUUUGGCgUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 31444 | 0.67 | 0.971714 |
Target: 5'- --cGAUUGGAAcuGCGAAAAcguuCCgGCAGGa -3' miRNA: 3'- uuuCUGGCCUU--UGCUUUUu---GG-CGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 18707 | 0.68 | 0.96482 |
Target: 5'- cGAG-CCG--AGCGGGAAACCGCuGGu -3' miRNA: 3'- uUUCuGGCcuUUGCUUUUUGGCGuCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 15820 | 0.68 | 0.956826 |
Target: 5'- ----cCCGGAuugauuuCGAGAAcCCGCAGGc -3' miRNA: 3'- uuucuGGCCUuu-----GCUUUUuGGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 28414 | 0.68 | 0.956826 |
Target: 5'- ---cGCCGGcauucucGGCGu-GAGCCGCAGGa -3' miRNA: 3'- uuucUGGCCu------UUGCuuUUUGGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 29613 | 0.69 | 0.931694 |
Target: 5'- -uGGAUCGGGAcaggcucaagGCGGAGAACgaggugcugCGCAGGu -3' miRNA: 3'- uuUCUGGCCUU----------UGCUUUUUG---------GCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 52626 | 0.69 | 0.925754 |
Target: 5'- gGAAGGCggUGGAGACGAucaGGAACUGCAc- -3' miRNA: 3'- -UUUCUG--GCCUUUGCU---UUUUGGCGUcc -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 46882 | 0.7 | 0.906094 |
Target: 5'- ---aGCCGGcgcACGcaauGAAAGCCGCAGGu -3' miRNA: 3'- uuucUGGCCuu-UGC----UUUUUGGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 24823 | 0.7 | 0.912953 |
Target: 5'- --cGGCgGGAAAgGGAGucuuaccuCCGCAGGg -3' miRNA: 3'- uuuCUGgCCUUUgCUUUuu------GGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 31596 | 0.72 | 0.812058 |
Target: 5'- cGAGAUCGGAGAUGc-AAACCcaguGCAGGa -3' miRNA: 3'- uUUCUGGCCUUUGCuuUUUGG----CGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 43973 | 0.73 | 0.802039 |
Target: 5'- --uGACUGGGuggugAACGGAAAauGCUGCGGGa -3' miRNA: 3'- uuuCUGGCCU-----UUGCUUUU--UGGCGUCC- -5' |
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8925 | 3' | -47.5 | NC_002484.1 | + | 38850 | 0.73 | 0.781421 |
Target: 5'- cAAGGCgGaGAACGAGAcGCUGCGGGg -3' miRNA: 3'- uUUCUGgCcUUUGCUUUuUGGCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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