miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8925 3' -47.5 NC_002484.1 + 3019 0.66 0.98812
Target:  5'- -cAGGCUGGAGAaugcgaucaaccuUGAAugcGACCGUGGGu -3'
miRNA:   3'- uuUCUGGCCUUU-------------GCUUu--UUGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 6872 0.67 0.980148
Target:  5'- --uGACCGGAGAac-AGAACCGUcucccAGGu -3'
miRNA:   3'- uuuCUGGCCUUUgcuUUUUGGCG-----UCC- -5'
8925 3' -47.5 NC_002484.1 + 15820 0.68 0.956826
Target:  5'- ----cCCGGAuugauuuCGAGAAcCCGCAGGc -3'
miRNA:   3'- uuucuGGCCUuu-----GCUUUUuGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 16404 0.66 0.989842
Target:  5'- -cGGACCGG---CGAAAuacuuccggGGCgGCAGGa -3'
miRNA:   3'- uuUCUGGCCuuuGCUUU---------UUGgCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 18248 0.66 0.989842
Target:  5'- cAGGGCCGGGAACauc--GCCGgcaAGGg -3'
miRNA:   3'- uUUCUGGCCUUUGcuuuuUGGCg--UCC- -5'
8925 3' -47.5 NC_002484.1 + 18400 0.66 0.98337
Target:  5'- ---cGCCGGAuauccacCGGAAAccguuccgucugggcGCCGCAGGu -3'
miRNA:   3'- uuucUGGCCUuu-----GCUUUU---------------UGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 18707 0.68 0.96482
Target:  5'- cGAG-CCG--AGCGGGAAACCGCuGGu -3'
miRNA:   3'- uUUCuGGCcuUUGCUUUUUGGCGuCC- -5'
8925 3' -47.5 NC_002484.1 + 24823 0.7 0.912953
Target:  5'- --cGGCgGGAAAgGGAGucuuaccuCCGCAGGg -3'
miRNA:   3'- uuuCUGgCCUUUgCUUUuu------GGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 24878 0.66 0.987783
Target:  5'- cAAAG-CCGGAAuaccggucgauauuGCGGuaAGGACCuGCGGGc -3'
miRNA:   3'- -UUUCuGGCCUU--------------UGCU--UUUUGG-CGUCC- -5'
8925 3' -47.5 NC_002484.1 + 24972 0.67 0.980148
Target:  5'- --uGACCGGAGuCGAGAucGACgGCAc- -3'
miRNA:   3'- uuuCUGGCCUUuGCUUU--UUGgCGUcc -5'
8925 3' -47.5 NC_002484.1 + 28414 0.68 0.956826
Target:  5'- ---cGCCGGcauucucGGCGu-GAGCCGCAGGa -3'
miRNA:   3'- uuucUGGCCu------UUGCuuUUUGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 29613 0.69 0.931694
Target:  5'- -uGGAUCGGGAcaggcucaagGCGGAGAACgaggugcugCGCAGGu -3'
miRNA:   3'- uuUCUGGCCUU----------UGCUUUUUG---------GCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 31444 0.67 0.971714
Target:  5'- --cGAUUGGAAcuGCGAAAAcguuCCgGCAGGa -3'
miRNA:   3'- uuuCUGGCCUU--UGCUUUUu---GG-CGUCC- -5'
8925 3' -47.5 NC_002484.1 + 31596 0.72 0.812058
Target:  5'- cGAGAUCGGAGAUGc-AAACCcaguGCAGGa -3'
miRNA:   3'- uUUCUGGCCUUUGCuuUUUGG----CGUCC- -5'
8925 3' -47.5 NC_002484.1 + 37121 0.67 0.980148
Target:  5'- cGAGGACUGGGAA-GAguucGAAACCG-AGGc -3'
miRNA:   3'- -UUUCUGGCCUUUgCU----UUUUGGCgUCC- -5'
8925 3' -47.5 NC_002484.1 + 38850 0.73 0.781421
Target:  5'- cAAGGCgGaGAACGAGAcGCUGCGGGg -3'
miRNA:   3'- uUUCUGgCcUUUGCUUUuUGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 42812 0.66 0.986549
Target:  5'- -cAGAgCGuGAAGCGAcauucgaagcGAGACCGCAa- -3'
miRNA:   3'- uuUCUgGC-CUUUGCU----------UUUUGGCGUcc -5'
8925 3' -47.5 NC_002484.1 + 43973 0.73 0.802039
Target:  5'- --uGACUGGGuggugAACGGAAAauGCUGCGGGa -3'
miRNA:   3'- uuuCUGGCCU-----UUGCUUUU--UGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 46882 0.7 0.906094
Target:  5'- ---aGCCGGcgcACGcaauGAAAGCCGCAGGu -3'
miRNA:   3'- uuucUGGCCuu-UGC----UUUUUGGCGUCC- -5'
8925 3' -47.5 NC_002484.1 + 52626 0.69 0.925754
Target:  5'- gGAAGGCggUGGAGACGAucaGGAACUGCAc- -3'
miRNA:   3'- -UUUCUG--GCCUUUGCU---UUUUGGCGUcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.