miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8925 5' -54.2 NC_002484.1 + 5257 0.68 0.611717
Target:  5'- gUGCCUGCGGaaugaugCcgUGCagauugGCGCCg -3'
miRNA:   3'- -AUGGACGCCgaaa---GuaACGca----CGCGG- -5'
8925 5' -54.2 NC_002484.1 + 17548 0.69 0.545101
Target:  5'- aUACCUGaCGGC---CAUUGuUGUGaCGCCg -3'
miRNA:   3'- -AUGGAC-GCCGaaaGUAAC-GCAC-GCGG- -5'
8925 5' -54.2 NC_002484.1 + 17597 0.73 0.331292
Target:  5'- cUACCgagacGCGGCUUUC--UGUcUGCGCCg -3'
miRNA:   3'- -AUGGa----CGCCGAAAGuaACGcACGCGG- -5'
8925 5' -54.2 NC_002484.1 + 47200 0.66 0.755096
Target:  5'- cACC-GCGGCUUccccCGaUGCGgaacaggaUGCGCCu -3'
miRNA:   3'- aUGGaCGCCGAAa---GUaACGC--------ACGCGG- -5'
8925 5' -54.2 NC_002484.1 + 52938 0.67 0.667803
Target:  5'- gUGCC-GCGGCUUgagCug-GCuGUGCaGCCg -3'
miRNA:   3'- -AUGGaCGCCGAAa--GuaaCG-CACG-CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.