miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8927 3' -57.8 NC_002484.1 + 18356 0.66 0.538139
Target:  5'- -aGAGCGCugGCGAGUUcaGCagugACCAGUCGAg -3'
miRNA:   3'- agCUCGCG--CGCUUAG--CG----UGGUCGGUU- -5'
8927 3' -57.8 NC_002484.1 + 32707 0.66 0.517048
Target:  5'- aUGAGCuGCGCGAugCGCuGCUGGCCu- -3'
miRNA:   3'- aGCUCG-CGCGCUuaGCG-UGGUCGGuu -5'
8927 3' -57.8 NC_002484.1 + 24788 0.67 0.496296
Target:  5'- gCGAGguacUGCGUGAcgCGCACCAacaaaaacGCCGg -3'
miRNA:   3'- aGCUC----GCGCGCUuaGCGUGGU--------CGGUu -5'
8927 3' -57.8 NC_002484.1 + 16350 0.67 0.465902
Target:  5'- aCGgccAGCGacuuCGCGGAUCGCAUC-GCCGAg -3'
miRNA:   3'- aGC---UCGC----GCGCUUAGCGUGGuCGGUU- -5'
8927 3' -57.8 NC_002484.1 + 37256 0.67 0.465902
Target:  5'- -gGAGCaGCGCGAGgaaaugCGCAa-GGCCAAa -3'
miRNA:   3'- agCUCG-CGCGCUUa-----GCGUggUCGGUU- -5'
8927 3' -57.8 NC_002484.1 + 7847 0.67 0.455985
Target:  5'- aCGcGCGCGCGuagauAUUGuCACCaaGGCCAAg -3'
miRNA:   3'- aGCuCGCGCGCu----UAGC-GUGG--UCGGUU- -5'
8927 3' -57.8 NC_002484.1 + 21240 0.67 0.455985
Target:  5'- gUGAGCGCGUcauggccaacaGGAUCGCcUCGGCUAu -3'
miRNA:   3'- aGCUCGCGCG-----------CUUAGCGuGGUCGGUu -5'
8927 3' -57.8 NC_002484.1 + 5543 0.7 0.346819
Target:  5'- cUGGGCGC-CGAGagagaCGCACCGGUCAGg -3'
miRNA:   3'- aGCUCGCGcGCUUa----GCGUGGUCGGUU- -5'
8927 3' -57.8 NC_002484.1 + 5172 0.71 0.271115
Target:  5'- aCGAGCGCGCGcAUCGauguaGCUcugcaaGGCCGAa -3'
miRNA:   3'- aGCUCGCGCGCuUAGCg----UGG------UCGGUU- -5'
8927 3' -57.8 NC_002484.1 + 19594 0.75 0.155693
Target:  5'- cUCGccAGCGCGauaCGGAUCGCgaucaGCCAGCCAAg -3'
miRNA:   3'- -AGC--UCGCGC---GCUUAGCG-----UGGUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.