Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8927 | 3' | -57.8 | NC_002484.1 | + | 18356 | 0.66 | 0.538139 |
Target: 5'- -aGAGCGCugGCGAGUUcaGCagugACCAGUCGAg -3' miRNA: 3'- agCUCGCG--CGCUUAG--CG----UGGUCGGUU- -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 32707 | 0.66 | 0.517048 |
Target: 5'- aUGAGCuGCGCGAugCGCuGCUGGCCu- -3' miRNA: 3'- aGCUCG-CGCGCUuaGCG-UGGUCGGuu -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 24788 | 0.67 | 0.496296 |
Target: 5'- gCGAGguacUGCGUGAcgCGCACCAacaaaaacGCCGg -3' miRNA: 3'- aGCUC----GCGCGCUuaGCGUGGU--------CGGUu -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 16350 | 0.67 | 0.465902 |
Target: 5'- aCGgccAGCGacuuCGCGGAUCGCAUC-GCCGAg -3' miRNA: 3'- aGC---UCGC----GCGCUUAGCGUGGuCGGUU- -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 37256 | 0.67 | 0.465902 |
Target: 5'- -gGAGCaGCGCGAGgaaaugCGCAa-GGCCAAa -3' miRNA: 3'- agCUCG-CGCGCUUa-----GCGUggUCGGUU- -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 7847 | 0.67 | 0.455985 |
Target: 5'- aCGcGCGCGCGuagauAUUGuCACCaaGGCCAAg -3' miRNA: 3'- aGCuCGCGCGCu----UAGC-GUGG--UCGGUU- -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 21240 | 0.67 | 0.455985 |
Target: 5'- gUGAGCGCGUcauggccaacaGGAUCGCcUCGGCUAu -3' miRNA: 3'- aGCUCGCGCG-----------CUUAGCGuGGUCGGUu -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 5543 | 0.7 | 0.346819 |
Target: 5'- cUGGGCGC-CGAGagagaCGCACCGGUCAGg -3' miRNA: 3'- aGCUCGCGcGCUUa----GCGUGGUCGGUU- -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 5172 | 0.71 | 0.271115 |
Target: 5'- aCGAGCGCGCGcAUCGauguaGCUcugcaaGGCCGAa -3' miRNA: 3'- aGCUCGCGCGCuUAGCg----UGG------UCGGUU- -5' |
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8927 | 3' | -57.8 | NC_002484.1 | + | 19594 | 0.75 | 0.155693 |
Target: 5'- cUCGccAGCGCGauaCGGAUCGCgaucaGCCAGCCAAg -3' miRNA: 3'- -AGC--UCGCGC---GCUUAGCG-----UGGUCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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