miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8929 5' -55.6 NC_002484.1 + 27870 0.66 0.644532
Target:  5'- --gAGAACUCGCCGCA-CUGUCCg-- -3'
miRNA:   3'- augUCUUGAGCGGCGUcGAUGGGacu -5'
8929 5' -55.6 NC_002484.1 + 12880 0.67 0.600008
Target:  5'- cGCAGucgcucccucAGCUUGUCGCcGCUGCCCg-- -3'
miRNA:   3'- aUGUC----------UUGAGCGGCGuCGAUGGGacu -5'
8929 5' -55.6 NC_002484.1 + 5354 0.67 0.566874
Target:  5'- --gGGAACUCGgC-CAGUUGCgCCUGAa -3'
miRNA:   3'- augUCUUGAGCgGcGUCGAUG-GGACU- -5'
8929 5' -55.6 NC_002484.1 + 18558 0.69 0.502268
Target:  5'- cGCGcGAACggaCGCCGCGGUauUGCCgCUGGg -3'
miRNA:   3'- aUGU-CUUGa--GCGGCGUCG--AUGG-GACU- -5'
8929 5' -55.6 NC_002484.1 + 32498 0.69 0.450997
Target:  5'- aACcGAGCgccUUGCCGguGCUucACCCUGGa -3'
miRNA:   3'- aUGuCUUG---AGCGGCguCGA--UGGGACU- -5'
8929 5' -55.6 NC_002484.1 + 53948 0.7 0.412121
Target:  5'- cGCAGAGCaaggaGCCGgGGCUuucGCCUUGAu -3'
miRNA:   3'- aUGUCUUGag---CGGCgUCGA---UGGGACU- -5'
8929 5' -55.6 NC_002484.1 + 44486 0.71 0.349327
Target:  5'- -cCAGGACgugggcggCGCCGuCAGCUACCgaGAc -3'
miRNA:   3'- auGUCUUGa-------GCGGC-GUCGAUGGgaCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.