Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8929 | 5' | -55.6 | NC_002484.1 | + | 53948 | 0.7 | 0.412121 |
Target: 5'- cGCAGAGCaaggaGCCGgGGCUuucGCCUUGAu -3' miRNA: 3'- aUGUCUUGag---CGGCgUCGA---UGGGACU- -5' |
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8929 | 5' | -55.6 | NC_002484.1 | + | 44486 | 0.71 | 0.349327 |
Target: 5'- -cCAGGACgugggcggCGCCGuCAGCUACCgaGAc -3' miRNA: 3'- auGUCUUGa-------GCGGC-GUCGAUGGgaCU- -5' |
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8929 | 5' | -55.6 | NC_002484.1 | + | 32498 | 0.69 | 0.450997 |
Target: 5'- aACcGAGCgccUUGCCGguGCUucACCCUGGa -3' miRNA: 3'- aUGuCUUG---AGCGGCguCGA--UGGGACU- -5' |
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8929 | 5' | -55.6 | NC_002484.1 | + | 27870 | 0.66 | 0.644532 |
Target: 5'- --gAGAACUCGCCGCA-CUGUCCg-- -3' miRNA: 3'- augUCUUGAGCGGCGUcGAUGGGacu -5' |
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8929 | 5' | -55.6 | NC_002484.1 | + | 18558 | 0.69 | 0.502268 |
Target: 5'- cGCGcGAACggaCGCCGCGGUauUGCCgCUGGg -3' miRNA: 3'- aUGU-CUUGa--GCGGCGUCG--AUGG-GACU- -5' |
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8929 | 5' | -55.6 | NC_002484.1 | + | 12880 | 0.67 | 0.600008 |
Target: 5'- cGCAGucgcucccucAGCUUGUCGCcGCUGCCCg-- -3' miRNA: 3'- aUGUC----------UUGAGCGGCGuCGAUGGGacu -5' |
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8929 | 5' | -55.6 | NC_002484.1 | + | 5354 | 0.67 | 0.566874 |
Target: 5'- --gGGAACUCGgC-CAGUUGCgCCUGAa -3' miRNA: 3'- augUCUUGAGCgGcGUCGAUG-GGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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