miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8931 5' -53.6 NC_002484.1 + 35805 0.8 0.140168
Target:  5'- cGGCUuacCAAGGcucGCGAGCGCGCCAAGc -3'
miRNA:   3'- aCCGGua-GUUCC---UGUUCGUGCGGUUC- -5'
8931 5' -53.6 NC_002484.1 + 39821 0.66 0.767276
Target:  5'- cGGCag-CAAGGGCGacuGGUAUGCCu-- -3'
miRNA:   3'- aCCGguaGUUCCUGU---UCGUGCGGuuc -5'
8931 5' -53.6 NC_002484.1 + 34772 0.66 0.75681
Target:  5'- -cGUCAUCGAGGucauCAAGUACGCg--- -3'
miRNA:   3'- acCGGUAGUUCCu---GUUCGUGCGguuc -5'
8931 5' -53.6 NC_002484.1 + 46033 0.66 0.75681
Target:  5'- ---gCAUCAAGGccGCGcguaAGCACGCCAAa -3'
miRNA:   3'- accgGUAGUUCC--UGU----UCGUGCGGUUc -5'
8931 5' -53.6 NC_002484.1 + 45726 0.66 0.74621
Target:  5'- gGGCCuugucuUCAagcGGGACuggcugAAGCGCGUCAAc -3'
miRNA:   3'- aCCGGu-----AGU---UCCUG------UUCGUGCGGUUc -5'
8931 5' -53.6 NC_002484.1 + 3219 0.67 0.71373
Target:  5'- cUGGCCgAUCAuccAGGGCG-GCACcCCGAa -3'
miRNA:   3'- -ACCGG-UAGU---UCCUGUuCGUGcGGUUc -5'
8931 5' -53.6 NC_002484.1 + 35064 0.67 0.702719
Target:  5'- -cGUCGcCGAGGAUAAGUACGUCAu- -3'
miRNA:   3'- acCGGUaGUUCCUGUUCGUGCGGUuc -5'
8931 5' -53.6 NC_002484.1 + 25824 0.67 0.702719
Target:  5'- cUGGUUAgcCGGGGugAAGCcgcccuucaGCGCCAGGc -3'
miRNA:   3'- -ACCGGUa-GUUCCugUUCG---------UGCGGUUC- -5'
8931 5' -53.6 NC_002484.1 + 37017 0.68 0.646817
Target:  5'- aGGCCGaacUgGAGcGACu-GCGCGCCGAa -3'
miRNA:   3'- aCCGGU---AgUUC-CUGuuCGUGCGGUUc -5'
8931 5' -53.6 NC_002484.1 + 7025 0.69 0.624278
Target:  5'- cGGCCAUCccaGAGGACc----CGCCAGGu -3'
miRNA:   3'- aCCGGUAG---UUCCUGuucguGCGGUUC- -5'
8931 5' -53.6 NC_002484.1 + 41715 0.69 0.611889
Target:  5'- aGGCCAgugCAAGGcucCAGagauaucGCugGCCGAGc -3'
miRNA:   3'- aCCGGUa--GUUCCu--GUU-------CGugCGGUUC- -5'
8931 5' -53.6 NC_002484.1 + 5862 0.69 0.601768
Target:  5'- aGGCC-UC-GGGcCAccaauuGGCGCGCCAGGu -3'
miRNA:   3'- aCCGGuAGuUCCuGU------UCGUGCGGUUC- -5'
8931 5' -53.6 NC_002484.1 + 13290 0.69 0.590548
Target:  5'- cGGCCAUCu-GcGCAAGCGCGUUGAu -3'
miRNA:   3'- aCCGGUAGuuCcUGUUCGUGCGGUUc -5'
8931 5' -53.6 NC_002484.1 + 21210 0.69 0.568229
Target:  5'- cGGCUAUCGAGGcagccgccuaGCAAauuaCGCGCCAAa -3'
miRNA:   3'- aCCGGUAGUUCC----------UGUUc---GUGCGGUUc -5'
8931 5' -53.6 NC_002484.1 + 29100 0.71 0.502829
Target:  5'- aUGGCCAUCgAAGGGCuugguGCuCGCgAAGc -3'
miRNA:   3'- -ACCGGUAG-UUCCUGuu---CGuGCGgUUC- -5'
8931 5' -53.6 NC_002484.1 + 36720 0.71 0.471361
Target:  5'- aGcGCCAacggCAGGccGACGAGCAgGCCAGGa -3'
miRNA:   3'- aC-CGGUa---GUUC--CUGUUCGUgCGGUUC- -5'
8931 5' -53.6 NC_002484.1 + 6578 0.71 0.461094
Target:  5'- aGGCCAUCAAGaGACug--GCGCCAc- -3'
miRNA:   3'- aCCGGUAGUUC-CUGuucgUGCGGUuc -5'
8931 5' -53.6 NC_002484.1 + 27430 0.66 0.767276
Target:  5'- cGGCCGgcuUCAA--GCAGGCcUGCCAGGc -3'
miRNA:   3'- aCCGGU---AGUUccUGUUCGuGCGGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.