miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8932 3' -53.4 NC_002484.1 + 37196 0.66 0.82031
Target:  5'- gCGCCUGGAauGCCGcgaccuagauUcgaccgaguugaaagCCAACAUugaGUGGCu -3'
miRNA:   3'- gGCGGACCU--CGGU----------A---------------GGUUGUA---UACCG- -5'
8932 3' -53.4 NC_002484.1 + 19310 0.66 0.816562
Target:  5'- gCCGCCUGGcGC-AUgC-ACAUGcGGCg -3'
miRNA:   3'- -GGCGGACCuCGgUAgGuUGUAUaCCG- -5'
8932 3' -53.4 NC_002484.1 + 13465 0.67 0.787495
Target:  5'- gCCGCCgccGGGGCCAa-CAGCg---GGCc -3'
miRNA:   3'- -GGCGGa--CCUCGGUagGUUGuauaCCG- -5'
8932 3' -53.4 NC_002484.1 + 18152 0.67 0.746482
Target:  5'- aUCGCU--GAGCCAUCCGGC----GGCg -3'
miRNA:   3'- -GGCGGacCUCGGUAGGUUGuauaCCG- -5'
8932 3' -53.4 NC_002484.1 + 4337 0.68 0.703574
Target:  5'- uCCGCUgcGAGCCAgggcggcauccaUCCGGCGcuUGGCc -3'
miRNA:   3'- -GGCGGacCUCGGU------------AGGUUGUauACCG- -5'
8932 3' -53.4 NC_002484.1 + 51426 0.69 0.648419
Target:  5'- uCCGUCUGGuuccGCCAaucucuUCCGcCAUGauUGGCu -3'
miRNA:   3'- -GGCGGACCu---CGGU------AGGUuGUAU--ACCG- -5'
8932 3' -53.4 NC_002484.1 + 4875 0.69 0.648419
Target:  5'- gCCGCCa-GAGCCGUCgAugGaggugAUGGCc -3'
miRNA:   3'- -GGCGGacCUCGGUAGgUugUa----UACCG- -5'
8932 3' -53.4 NC_002484.1 + 35507 0.71 0.515664
Target:  5'- aCUGCCUGcgcacagauacuGAGCCAgaucagaUCCAGCAgucGGCa -3'
miRNA:   3'- -GGCGGAC------------CUCGGU-------AGGUUGUauaCCG- -5'
8932 3' -53.4 NC_002484.1 + 19525 0.74 0.37884
Target:  5'- gUCGCCcGGAGCCAggUCUGGCGcagGGCa -3'
miRNA:   3'- -GGCGGaCCUCGGU--AGGUUGUauaCCG- -5'
8932 3' -53.4 NC_002484.1 + 1578 0.77 0.254353
Target:  5'- cUCGCCaGGuccaaAGCCAUCCAGCAgc-GGCa -3'
miRNA:   3'- -GGCGGaCC-----UCGGUAGGUUGUauaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.