miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8933 5' -51.7 NC_002484.1 + 7964 0.67 0.788218
Target:  5'- gGACGUucuucGCUUGcGuGCGAAGUugGGUGCa -3'
miRNA:   3'- -UUGCG-----CGAAUaC-CGCUUCAugUCGUG- -5'
8933 5' -51.7 NC_002484.1 + 45412 0.67 0.818254
Target:  5'- -uCGCGUcaUAUGGCGcGGUgGCGGCAUu -3'
miRNA:   3'- uuGCGCGa-AUACCGCuUCA-UGUCGUG- -5'
8933 5' -51.7 NC_002484.1 + 32817 0.69 0.6899
Target:  5'- cAUGCGCggcAUGGCGAAacagGCGGCAg -3'
miRNA:   3'- uUGCGCGaa-UACCGCUUca--UGUCGUg -5'
8933 5' -51.7 NC_002484.1 + 26030 0.7 0.655561
Target:  5'- --aGCGCg---GGCGGAGaucacgACAGCACc -3'
miRNA:   3'- uugCGCGaauaCCGCUUCa-----UGUCGUG- -5'
8933 5' -51.7 NC_002484.1 + 12102 0.72 0.530065
Target:  5'- -uCGaguaGCUUcGUGGCGAAGUcgcuCAGCACg -3'
miRNA:   3'- uuGCg---CGAA-UACCGCUUCAu---GUCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.