miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8934 3' -54.8 NC_002484.1 + 32448 0.74 0.307264
Target:  5'- cGCCCUU-CUGCgAGagaACGAAGGCCUg -3'
miRNA:   3'- -CGGGAAcGAUGgUUg--UGCUUCCGGGu -5'
8934 3' -54.8 NC_002484.1 + 8318 0.73 0.314235
Target:  5'- cGCCCUUGUggaacuggaugucUGCCGGCGgGAGuggaucgauGGCCCAu -3'
miRNA:   3'- -CGGGAACG-------------AUGGUUGUgCUU---------CCGGGU- -5'
8934 3' -54.8 NC_002484.1 + 48885 0.7 0.458499
Target:  5'- cCCCUUGCccucuCCuucCACG-AGGCCCAg -3'
miRNA:   3'- cGGGAACGau---GGuu-GUGCuUCCGGGU- -5'
8934 3' -54.8 NC_002484.1 + 51818 0.7 0.47879
Target:  5'- uGUCCUUGaugGCCAAgGCGcAGGCCgGg -3'
miRNA:   3'- -CGGGAACga-UGGUUgUGCuUCCGGgU- -5'
8934 3' -54.8 NC_002484.1 + 27734 0.67 0.652294
Target:  5'- gGCCCUgUGCcgaGCCGcGCGCGGGcagaaguuuGGCCCGa -3'
miRNA:   3'- -CGGGA-ACGa--UGGU-UGUGCUU---------CCGGGU- -5'
8934 3' -54.8 NC_002484.1 + 37884 0.66 0.707292
Target:  5'- uGCCggcaggcgGCUGCCAGCAUGAGGuGCaCUg -3'
miRNA:   3'- -CGGgaa-----CGAUGGUUGUGCUUC-CG-GGu -5'
8934 3' -54.8 NC_002484.1 + 36927 0.66 0.728847
Target:  5'- aGCgCCUUGCcGCCGA-ACGccGaGCCCAg -3'
miRNA:   3'- -CG-GGAACGaUGGUUgUGCuuC-CGGGU- -5'
8934 3' -54.8 NC_002484.1 + 12226 0.66 0.728847
Target:  5'- gGCaaucgaCUUGcCUACaAGCugGAAGGCuCCAa -3'
miRNA:   3'- -CGg-----GAAC-GAUGgUUGugCUUCCG-GGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.