miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8935 3' -52.5 NC_002484.1 + 10620 0.71 0.583019
Target:  5'- aGGCGGAAccgccGGAGCGcugaaugguugcgguAGaGGUCACCACa -3'
miRNA:   3'- gCCGUCUUc----UUUCGU---------------UC-CCAGUGGUG- -5'
8935 3' -52.5 NC_002484.1 + 36492 0.67 0.79689
Target:  5'- gCGGCAGGAGucAuccgcuaucguucAGCGGGGGagUCuGCCACc -3'
miRNA:   3'- -GCCGUCUUCu-U-------------UCGUUCCC--AG-UGGUG- -5'
8935 3' -52.5 NC_002484.1 + 33811 0.66 0.853858
Target:  5'- gCGGCAGGAGAagggauuguGAGCAAGGa--ACUgaACa -3'
miRNA:   3'- -GCCGUCUUCU---------UUCGUUCCcagUGG--UG- -5'
8935 3' -52.5 NC_002484.1 + 1398 0.66 0.853858
Target:  5'- gGGcCAGGAGGAAGUcAGGGaaUACCGa -3'
miRNA:   3'- gCC-GUCUUCUUUCGuUCCCa-GUGGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.