miRNA: 3'- ucCGCU-------UUCGGGGCCGAGga--ACGAGa -5'
miRNA: 3'- -UCCGCu-UUCGGGGCCGag-GaACGAGa -5'
miRNA: 3'- -UCCGCUUUcgGGGCCGAG-GA--------------ACGAGA- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 8935 | 5' | -59 | NC_002484.1 | + | 15734 | 0.68 | 0.357205 |
|
Target: 5'- -aGCGAugaccccAGGCCCUGGCUCgcacUGCUCa -3' miRNA: 3'- ucCGCU-------UUCGGGGCCGAGga--ACGAGa -5' |
|||||||
| 8935 | 5' | -59 | NC_002484.1 | + | 26309 | 0.67 | 0.429534 |
|
Target: 5'- cAGGCGuuGGGCUCCGGCauaC-UGCUCc -3' miRNA: 3'- -UCCGCu-UUCGGGGCCGag-GaACGAGa -5' |
|||||||
| 8935 | 5' | -59 | NC_002484.1 | + | 6634 | 0.67 | 0.445777 |
|
Target: 5'- uAGGCGGAAugCCUGGCUCgCUgcugacuaccucacUGCUCUc -3' miRNA: 3'- -UCCGCUUUcgGGGCCGAG-GA--------------ACGAGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home