miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8936 3' -52.9 NC_002484.1 + 38127 0.66 0.761962
Target:  5'- gUGCcugGGGguGCGUcgUGACUGAUCAu -3'
miRNA:   3'- aACGa--CUCguCGCGa-ACUGGUUAGUc -5'
8936 3' -52.9 NC_002484.1 + 25327 0.66 0.761962
Target:  5'- -aGCgaaUGGGCuucAGCGCUUGGCuCAAaCAGg -3'
miRNA:   3'- aaCG---ACUCG---UCGCGAACUG-GUUaGUC- -5'
8936 3' -52.9 NC_002484.1 + 18329 0.67 0.740331
Target:  5'- -aGUcGAGCGGCucGCUgGACuCGAUCAGg -3'
miRNA:   3'- aaCGaCUCGUCG--CGAaCUG-GUUAGUC- -5'
8936 3' -52.9 NC_002484.1 + 4280 0.68 0.672994
Target:  5'- gUUGCUGGG-AGCGCUggaGAUCucGUCGGa -3'
miRNA:   3'- -AACGACUCgUCGCGAa--CUGGu-UAGUC- -5'
8936 3' -52.9 NC_002484.1 + 3428 0.69 0.581251
Target:  5'- gUGCUGuaccaGGCAGCGC--GACCAgcgcuAUCAGc -3'
miRNA:   3'- aACGAC-----UCGUCGCGaaCUGGU-----UAGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.