Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8942 | 5' | -52.5 | NC_002512.2 | + | 173800 | 0.71 | 0.907342 |
Target: 5'- gGCCGCCUUCCagCUCgaUCUgUUGcggaUGCu -3' miRNA: 3'- -CGGCGGAAGGa-GAGaaAGAgAGC----ACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 189586 | 0.72 | 0.895361 |
Target: 5'- gGCCGCCgggUCCUCgggacgacgUUCGUGCg -3' miRNA: 3'- -CGGCGGa--AGGAGagaaaga--GAGCACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 6691 | 0.72 | 0.894707 |
Target: 5'- gGCCGUCUguUCCaucUCUCUgaugCUCUcCGUGUa -3' miRNA: 3'- -CGGCGGA--AGG---AGAGAaa--GAGA-GCACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 3023 | 0.72 | 0.87407 |
Target: 5'- gGCCGCUUcUCC-CUCUUUCcgCUCGUucGCc -3' miRNA: 3'- -CGGCGGA-AGGaGAGAAAGa-GAGCA--CG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 2003 | 0.74 | 0.783288 |
Target: 5'- cGUCGUgUUUCUCUCUUUCgUCUCuGUGUu -3' miRNA: 3'- -CGGCGgAAGGAGAGAAAG-AGAG-CACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 49902 | 0.78 | 0.575234 |
Target: 5'- uCCGCCUUCCUCUgUguacaUCUCGUcGCa -3' miRNA: 3'- cGGCGGAAGGAGAgAaag--AGAGCA-CG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 228687 | 1.14 | 0.004882 |
Target: 5'- gGCCGCCUUCCUCUCUUUCUCUCGUGCu -3' miRNA: 3'- -CGGCGGAAGGAGAGAAAGAGAGCACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 113402 | 0.68 | 0.979975 |
Target: 5'- cGCgCGCUcUCC-CUCUUgCUCUUgGUGCa -3' miRNA: 3'- -CG-GCGGaAGGaGAGAAaGAGAG-CACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 122495 | 0.67 | 0.987318 |
Target: 5'- cGCCgGCCUgaaCCUCUCgg--UCUCGgucugGCu -3' miRNA: 3'- -CGG-CGGAa--GGAGAGaaagAGAGCa----CG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 222370 | 0.67 | 0.988778 |
Target: 5'- gGCCGCCUUCCccggcgggCUCUggCUcCUCaUGg -3' miRNA: 3'- -CGGCGGAAGGa-------GAGAaaGA-GAGcACg -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 960 | 0.67 | 0.991303 |
Target: 5'- uCCGUCUgUCUCUCUUcucgucguccUCUCUCGcGUc -3' miRNA: 3'- cGGCGGAaGGAGAGAA----------AGAGAGCaCG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 74517 | 0.67 | 0.991303 |
Target: 5'- cGCCGCCgccCCgacCUCgagCgccgCUCGUGUu -3' miRNA: 3'- -CGGCGGaa-GGa--GAGaaaGa---GAGCACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 177441 | 0.66 | 0.992385 |
Target: 5'- uCCGCCUUCUUUUUcaUCUcCUCGUa- -3' miRNA: 3'- cGGCGGAAGGAGAGaaAGA-GAGCAcg -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 180629 | 0.66 | 0.992385 |
Target: 5'- uCCGCgaUCCgCUC-UUCUCUaggGUGCg -3' miRNA: 3'- cGGCGgaAGGaGAGaAAGAGAg--CACG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 167640 | 0.66 | 0.993357 |
Target: 5'- cGUCGCCcagcucgUCCUCUCgucgucCUCUCGcaggacGCg -3' miRNA: 3'- -CGGCGGa------AGGAGAGaaa---GAGAGCa-----CG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 3457 | 0.66 | 0.994228 |
Target: 5'- cGCCGCCcccucaUCCUUUCUcgccaUCUCcaUCGUcGCc -3' miRNA: 3'- -CGGCGGa-----AGGAGAGAa----AGAG--AGCA-CG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 6817 | 0.66 | 0.995003 |
Target: 5'- aCCGCCUucUCCgagcggCUCUUUCU-UCGUa- -3' miRNA: 3'- cGGCGGA--AGGa-----GAGAAAGAgAGCAcg -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 107972 | 0.66 | 0.995003 |
Target: 5'- cGCCGCCUcgUCCcgCUCg--CUCccCGcGCg -3' miRNA: 3'- -CGGCGGA--AGGa-GAGaaaGAGa-GCaCG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 191857 | 0.66 | 0.995693 |
Target: 5'- uCCGgCguccCCUCUCUUUUgUCUCGcGCa -3' miRNA: 3'- cGGCgGaa--GGAGAGAAAG-AGAGCaCG- -5' |
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8942 | 5' | -52.5 | NC_002512.2 | + | 143460 | 0.66 | 0.995693 |
Target: 5'- -gCGCCccgUCCgCUCgucaUCUCUCG-GCg -3' miRNA: 3'- cgGCGGa--AGGaGAGaa--AGAGAGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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