miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 5' -52.5 NC_002512.2 + 189586 0.72 0.895361
Target:  5'- gGCCGCCgggUCCUCgggacgacgUUCGUGCg -3'
miRNA:   3'- -CGGCGGa--AGGAGagaaaga--GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 6691 0.72 0.894707
Target:  5'- gGCCGUCUguUCCaucUCUCUgaugCUCUcCGUGUa -3'
miRNA:   3'- -CGGCGGA--AGG---AGAGAaa--GAGA-GCACG- -5'
8942 5' -52.5 NC_002512.2 + 3023 0.72 0.87407
Target:  5'- gGCCGCUUcUCC-CUCUUUCcgCUCGUucGCc -3'
miRNA:   3'- -CGGCGGA-AGGaGAGAAAGa-GAGCA--CG- -5'
8942 5' -52.5 NC_002512.2 + 2003 0.74 0.783288
Target:  5'- cGUCGUgUUUCUCUCUUUCgUCUCuGUGUu -3'
miRNA:   3'- -CGGCGgAAGGAGAGAAAG-AGAG-CACG- -5'
8942 5' -52.5 NC_002512.2 + 49902 0.78 0.575234
Target:  5'- uCCGCCUUCCUCUgUguacaUCUCGUcGCa -3'
miRNA:   3'- cGGCGGAAGGAGAgAaag--AGAGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 228687 1.14 0.004882
Target:  5'- gGCCGCCUUCCUCUCUUUCUCUCGUGCu -3'
miRNA:   3'- -CGGCGGAAGGAGAGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 15996 0.68 0.975291
Target:  5'- uGCCGaUUUCaaC-CUUUCUCUUGUGCg -3'
miRNA:   3'- -CGGCgGAAGgaGaGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 113402 0.68 0.979975
Target:  5'- cGCgCGCUcUCC-CUCUUgCUCUUgGUGCa -3'
miRNA:   3'- -CG-GCGGaAGGaGAGAAaGAGAG-CACG- -5'
8942 5' -52.5 NC_002512.2 + 122495 0.67 0.987318
Target:  5'- cGCCgGCCUgaaCCUCUCgg--UCUCGgucugGCu -3'
miRNA:   3'- -CGG-CGGAa--GGAGAGaaagAGAGCa----CG- -5'
8942 5' -52.5 NC_002512.2 + 143460 0.66 0.995693
Target:  5'- -gCGCCccgUCCgCUCgucaUCUCUCG-GCg -3'
miRNA:   3'- cgGCGGa--AGGaGAGaa--AGAGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 191857 0.66 0.995693
Target:  5'- uCCGgCguccCCUCUCUUUUgUCUCGcGCa -3'
miRNA:   3'- cGGCgGaa--GGAGAGAAAG-AGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 107972 0.66 0.995003
Target:  5'- cGCCGCCUcgUCCcgCUCg--CUCccCGcGCg -3'
miRNA:   3'- -CGGCGGA--AGGa-GAGaaaGAGa-GCaCG- -5'
8942 5' -52.5 NC_002512.2 + 6817 0.66 0.995003
Target:  5'- aCCGCCUucUCCgagcggCUCUUUCU-UCGUa- -3'
miRNA:   3'- cGGCGGA--AGGa-----GAGAAAGAgAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 3457 0.66 0.994228
Target:  5'- cGCCGCCcccucaUCCUUUCUcgccaUCUCcaUCGUcGCc -3'
miRNA:   3'- -CGGCGGa-----AGGAGAGAa----AGAG--AGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 167640 0.66 0.993357
Target:  5'- cGUCGCCcagcucgUCCUCUCgucgucCUCUCGcaggacGCg -3'
miRNA:   3'- -CGGCGGa------AGGAGAGaaa---GAGAGCa-----CG- -5'
8942 5' -52.5 NC_002512.2 + 180629 0.66 0.992385
Target:  5'- uCCGCgaUCCgCUC-UUCUCUaggGUGCg -3'
miRNA:   3'- cGGCGgaAGGaGAGaAAGAGAg--CACG- -5'
8942 5' -52.5 NC_002512.2 + 177441 0.66 0.992385
Target:  5'- uCCGCCUUCUUUUUcaUCUcCUCGUa- -3'
miRNA:   3'- cGGCGGAAGGAGAGaaAGA-GAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 74517 0.67 0.991303
Target:  5'- cGCCGCCgccCCgacCUCgagCgccgCUCGUGUu -3'
miRNA:   3'- -CGGCGGaa-GGa--GAGaaaGa---GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 960 0.67 0.991303
Target:  5'- uCCGUCUgUCUCUCUUcucgucguccUCUCUCGcGUc -3'
miRNA:   3'- cGGCGGAaGGAGAGAA----------AGAGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 222370 0.67 0.988778
Target:  5'- gGCCGCCUUCCccggcgggCUCUggCUcCUCaUGg -3'
miRNA:   3'- -CGGCGGAAGGa-------GAGAaaGA-GAGcACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.