miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 28231 0.66 0.959816
Target:  5'- aGGAaCCGCGGCcGGGGCcgucgcgccgcgAGuacGACGGCg -3'
miRNA:   3'- -CCUaGGUGUCGuCCUCG------------UCc--UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 142261 0.66 0.956204
Target:  5'- gGGAUCCGgucgucGUccGGGcCGGGGACGGCg -3'
miRNA:   3'- -CCUAGGUgu----CGucCUC-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 83203 0.66 0.963218
Target:  5'- -cGUCCGCGcGCGGG-GCGGGGGgagcguCGGUc -3'
miRNA:   3'- ccUAGGUGU-CGUCCuCGUCCUU------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 56828 0.66 0.963218
Target:  5'- -uGUCCGCAGUuGucGCAGaGGAUGGCc -3'
miRNA:   3'- ccUAGGUGUCGuCcuCGUC-CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 61971 0.66 0.963218
Target:  5'- gGGAaa-ACgGGCAGGAGCAcguuGGuGACGGCc -3'
miRNA:   3'- -CCUaggUG-UCGUCCUCGU----CC-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 35046 0.66 0.962887
Target:  5'- gGGGUCCGCA-CGGGc-CGGGAcagcaccACGGUg -3'
miRNA:   3'- -CCUAGGUGUcGUCCucGUCCU-------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 136173 0.66 0.955078
Target:  5'- cGAUCCgccgcGCGGCGGGGucGCcGGGAucgcgucgacgccgGCGGCc -3'
miRNA:   3'- cCUAGG-----UGUCGUCCU--CG-UCCU--------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 57012 0.66 0.963218
Target:  5'- cGGGUCgGCGGUcugaccgggGGGAGCGGaGGCcGCg -3'
miRNA:   3'- -CCUAGgUGUCG---------UCCUCGUCcUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 45524 0.66 0.959816
Target:  5'- ---cCCGCGGCGGGcGGCG---GCGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCC-UCGUccuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 4029 0.66 0.963218
Target:  5'- cGGAgagacgaCACc-CGGGA-CAGGAGCGGCu -3'
miRNA:   3'- -CCUag-----GUGucGUCCUcGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 109816 0.66 0.963218
Target:  5'- aGGAUCaguCugAG-GGGAGUccccuGGGGCGGCa -3'
miRNA:   3'- -CCUAG---GugUCgUCCUCGu----CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 98082 0.66 0.959816
Target:  5'- gGGAcgugUCCG-AGC-GGAuGaCGGGGACGGCg -3'
miRNA:   3'- -CCU----AGGUgUCGuCCU-C-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 12610 0.66 0.959816
Target:  5'- cGGUCCGCauGGC-GGAGCuGGugaGGCc -3'
miRNA:   3'- cCUAGGUG--UCGuCCUCGuCCuugCCG- -5'
8943 3' -55.4 NC_002512.2 + 2816 0.66 0.959465
Target:  5'- gGGAcCCGgcGCGGGcGCGGGcccggacGACGGCg -3'
miRNA:   3'- -CCUaGGUguCGUCCuCGUCC-------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 37696 0.66 0.956204
Target:  5'- cGGGUCCucccCAGCcgcGGcGCAGG-ACGGa -3'
miRNA:   3'- -CCUAGGu---GUCGu--CCuCGUCCuUGCCg -5'
8943 3' -55.4 NC_002512.2 + 57844 0.66 0.966103
Target:  5'- cGGAUgaCCcgGCGGguGGGGCGcaugcugccggccGGAcCGGCg -3'
miRNA:   3'- -CCUA--GG--UGUCguCCUCGU-------------CCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 26214 0.66 0.959816
Target:  5'- gGGA-CCACcguGGCGacGGAGaCGGGAcCGGUa -3'
miRNA:   3'- -CCUaGGUG---UCGU--CCUC-GUCCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 118207 0.66 0.959816
Target:  5'- aGGccGUCUGguGCGacGGGGCccucgugcucGGGGACGGCa -3'
miRNA:   3'- -CC--UAGGUguCGU--CCUCG----------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 12417 0.66 0.958755
Target:  5'- gGGAUCgcgagcucgccgcgCGCgaGGCGGGAGCuGGGcuucuCGGCc -3'
miRNA:   3'- -CCUAG--------------GUG--UCGUCCUCGuCCUu----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 68128 0.66 0.956204
Target:  5'- cGAcCCGC-GUAccGuAGCAGGAGCGGCg -3'
miRNA:   3'- cCUaGGUGuCGU--CcUCGUCCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.