miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 83 0.68 0.907269
Target:  5'- aGGAggCgagagGCGGCGGGgggagaggaggccGGCAGGAGgCGGCa -3'
miRNA:   3'- -CCUagG-----UGUCGUCC-------------UCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 147 0.72 0.749805
Target:  5'- cGGUCgGCGGaggAGGcGGCAGGAGgCGGCa -3'
miRNA:   3'- cCUAGgUGUCg--UCC-UCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 200 0.72 0.768417
Target:  5'- aGGggCCcggGCGGagaGGGAGCGGGGACcgaagGGCa -3'
miRNA:   3'- -CCuaGG---UGUCg--UCCUCGUCCUUG-----CCG- -5'
8943 3' -55.4 NC_002512.2 + 2078 0.83 0.237989
Target:  5'- cGGAgUCCACgccgGGCGGGAGCGGGcgguACGGCc -3'
miRNA:   3'- -CCU-AGGUG----UCGUCCUCGUCCu---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 2816 0.66 0.959465
Target:  5'- gGGAcCCGgcGCGGGcGCGGGcccggacGACGGCg -3'
miRNA:   3'- -CCUaGGUguCGUCCuCGUCC-------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 3067 0.68 0.924743
Target:  5'- cGGAcgCgGCGGCGGcGGCGGccACGGCg -3'
miRNA:   3'- -CCUa-GgUGUCGUCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 3370 0.78 0.440788
Target:  5'- aGGA-CgGCGGCAGGgccgccAGCAGGAcccGCGGCg -3'
miRNA:   3'- -CCUaGgUGUCGUCC------UCGUCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 3574 0.67 0.934857
Target:  5'- cGAgCCACGGCccacaggccccGGGGGUcucGGGGACaGGCg -3'
miRNA:   3'- cCUaGGUGUCG-----------UCCUCG---UCCUUG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 4029 0.66 0.963218
Target:  5'- cGGAgagacgaCACc-CGGGA-CAGGAGCGGCu -3'
miRNA:   3'- -CCUag-----GUGucGUCCUcGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 4198 0.68 0.929407
Target:  5'- aGGAcgCCGgagauCGGUGGGAGCggccgcgGGGAGCGGg -3'
miRNA:   3'- -CCUa-GGU-----GUCGUCCUCG-------UCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 4511 0.7 0.83759
Target:  5'- aGGAUggaCGCgaGGguGGAGgAGGAgaaGCGGCg -3'
miRNA:   3'- -CCUAg--GUG--UCguCCUCgUCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 4626 0.69 0.888978
Target:  5'- aGGAcgcccUCCugGCGGagaAGGAGCacGGGAGCGGa -3'
miRNA:   3'- -CCU-----AGG--UGUCg--UCCUCG--UCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 4864 0.68 0.913718
Target:  5'- gGGGUUCGCcgcguGCGGcGccGGCuggAGGAGCGGCg -3'
miRNA:   3'- -CCUAGGUGu----CGUC-C--UCG---UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 5183 0.72 0.756367
Target:  5'- cGGccggCCcCAGCAGGgcgGGCAGGAccgcgggccagccgACGGCg -3'
miRNA:   3'- -CCua--GGuGUCGUCC---UCGUCCU--------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 6331 0.68 0.919344
Target:  5'- ---cCCGCGGgGGGAccgggcGCGGGGcCGGCg -3'
miRNA:   3'- ccuaGGUGUCgUCCU------CGUCCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 7300 0.68 0.929913
Target:  5'- cGGAcaggccuccUCCGCgacGGCGGGccgcGGCGGG-ACGGUc -3'
miRNA:   3'- -CCU---------AGGUG---UCGUCC----UCGUCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 7371 0.69 0.867427
Target:  5'- cGGcggCCGCGGCGGGcGGCcAGGcgcagaaGGCGGCc -3'
miRNA:   3'- -CCua-GGUGUCGUCC-UCG-UCC-------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 7491 0.66 0.969408
Target:  5'- cGAagCCGCGGCgcuccaugAGGAGCcagagcccgccgGGGAagGCGGCc -3'
miRNA:   3'- cCUa-GGUGUCG--------UCCUCG------------UCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 7700 0.67 0.944064
Target:  5'- cGGAcgacgccggCCGCGGCccGGGAGUAGGcguCGGg -3'
miRNA:   3'- -CCUa--------GGUGUCG--UCCUCGUCCuu-GCCg -5'
8943 3' -55.4 NC_002512.2 + 7742 0.69 0.888978
Target:  5'- cGGUCCuCGGgGgcGGAGCcGGGGCGGUa -3'
miRNA:   3'- cCUAGGuGUCgU--CCUCGuCCUUGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.