Results 1 - 20 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8943 | 3' | -55.4 | NC_002512.2 | + | 83 | 0.68 | 0.907269 |
Target: 5'- aGGAggCgagagGCGGCGGGgggagaggaggccGGCAGGAGgCGGCa -3' miRNA: 3'- -CCUagG-----UGUCGUCC-------------UCGUCCUU-GCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 147 | 0.72 | 0.749805 |
Target: 5'- cGGUCgGCGGaggAGGcGGCAGGAGgCGGCa -3' miRNA: 3'- cCUAGgUGUCg--UCC-UCGUCCUU-GCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 200 | 0.72 | 0.768417 |
Target: 5'- aGGggCCcggGCGGagaGGGAGCGGGGACcgaagGGCa -3' miRNA: 3'- -CCuaGG---UGUCg--UCCUCGUCCUUG-----CCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 2078 | 0.83 | 0.237989 |
Target: 5'- cGGAgUCCACgccgGGCGGGAGCGGGcgguACGGCc -3' miRNA: 3'- -CCU-AGGUG----UCGUCCUCGUCCu---UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 2816 | 0.66 | 0.959465 |
Target: 5'- gGGAcCCGgcGCGGGcGCGGGcccggacGACGGCg -3' miRNA: 3'- -CCUaGGUguCGUCCuCGUCC-------UUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 3067 | 0.68 | 0.924743 |
Target: 5'- cGGAcgCgGCGGCGGcGGCGGccACGGCg -3' miRNA: 3'- -CCUa-GgUGUCGUCcUCGUCcuUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 3370 | 0.78 | 0.440788 |
Target: 5'- aGGA-CgGCGGCAGGgccgccAGCAGGAcccGCGGCg -3' miRNA: 3'- -CCUaGgUGUCGUCC------UCGUCCU---UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 3574 | 0.67 | 0.934857 |
Target: 5'- cGAgCCACGGCccacaggccccGGGGGUcucGGGGACaGGCg -3' miRNA: 3'- cCUaGGUGUCG-----------UCCUCG---UCCUUG-CCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 4029 | 0.66 | 0.963218 |
Target: 5'- cGGAgagacgaCACc-CGGGA-CAGGAGCGGCu -3' miRNA: 3'- -CCUag-----GUGucGUCCUcGUCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 4198 | 0.68 | 0.929407 |
Target: 5'- aGGAcgCCGgagauCGGUGGGAGCggccgcgGGGAGCGGg -3' miRNA: 3'- -CCUa-GGU-----GUCGUCCUCG-------UCCUUGCCg -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 4511 | 0.7 | 0.83759 |
Target: 5'- aGGAUggaCGCgaGGguGGAGgAGGAgaaGCGGCg -3' miRNA: 3'- -CCUAg--GUG--UCguCCUCgUCCU---UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 4626 | 0.69 | 0.888978 |
Target: 5'- aGGAcgcccUCCugGCGGagaAGGAGCacGGGAGCGGa -3' miRNA: 3'- -CCU-----AGG--UGUCg--UCCUCG--UCCUUGCCg -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 4864 | 0.68 | 0.913718 |
Target: 5'- gGGGUUCGCcgcguGCGGcGccGGCuggAGGAGCGGCg -3' miRNA: 3'- -CCUAGGUGu----CGUC-C--UCG---UCCUUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 5183 | 0.72 | 0.756367 |
Target: 5'- cGGccggCCcCAGCAGGgcgGGCAGGAccgcgggccagccgACGGCg -3' miRNA: 3'- -CCua--GGuGUCGUCC---UCGUCCU--------------UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 6331 | 0.68 | 0.919344 |
Target: 5'- ---cCCGCGGgGGGAccgggcGCGGGGcCGGCg -3' miRNA: 3'- ccuaGGUGUCgUCCU------CGUCCUuGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 7300 | 0.68 | 0.929913 |
Target: 5'- cGGAcaggccuccUCCGCgacGGCGGGccgcGGCGGG-ACGGUc -3' miRNA: 3'- -CCU---------AGGUG---UCGUCC----UCGUCCuUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 7371 | 0.69 | 0.867427 |
Target: 5'- cGGcggCCGCGGCGGGcGGCcAGGcgcagaaGGCGGCc -3' miRNA: 3'- -CCua-GGUGUCGUCC-UCG-UCC-------UUGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 7491 | 0.66 | 0.969408 |
Target: 5'- cGAagCCGCGGCgcuccaugAGGAGCcagagcccgccgGGGAagGCGGCc -3' miRNA: 3'- cCUa-GGUGUCG--------UCCUCG------------UCCU--UGCCG- -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 7700 | 0.67 | 0.944064 |
Target: 5'- cGGAcgacgccggCCGCGGCccGGGAGUAGGcguCGGg -3' miRNA: 3'- -CCUa--------GGUGUCG--UCCUCGUCCuu-GCCg -5' |
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8943 | 3' | -55.4 | NC_002512.2 | + | 7742 | 0.69 | 0.888978 |
Target: 5'- cGGUCCuCGGgGgcGGAGCcGGGGCGGUa -3' miRNA: 3'- cCUAGGuGUCgU--CCUCGuCCUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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