miRNA display CGI


Results 1 - 20 of 384 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 82232 0.75 0.592365
Target:  5'- cGGggCCGguGaCGGuAGCGGGAGCGGCc -3'
miRNA:   3'- -CCuaGGUguC-GUCcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 91016 0.76 0.52292
Target:  5'- cGGAggcCCAuCAGCGGGAuacggggacugguGCGGGAGCGGg -3'
miRNA:   3'- -CCUa--GGU-GUCGUCCU-------------CGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 26646 0.76 0.533502
Target:  5'- uGAUCCAcCAGCgcacgaggucGGGGGCGGGcucgaAGCGGCa -3'
miRNA:   3'- cCUAGGU-GUCG----------UCCUCGUCC-----UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 97374 0.76 0.533502
Target:  5'- gGGA-CCGCGGCGgccGGAGaCGGGGGCGGg -3'
miRNA:   3'- -CCUaGGUGUCGU---CCUC-GUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 23401 0.76 0.533502
Target:  5'- uGAUCCACGGCGGGAGgaagcugauCGGGAcGCuGGCc -3'
miRNA:   3'- cCUAGGUGUCGUCCUC---------GUCCU-UG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 154561 0.75 0.552932
Target:  5'- cGGucgCCAUGG-GGGGGCAGGAuaACGGCg -3'
miRNA:   3'- -CCua-GGUGUCgUCCUCGUCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 8345 0.75 0.552932
Target:  5'- cGGGUCCGgcguagcgguaGGCGGGAGCgccgAGGAuccGCGGCg -3'
miRNA:   3'- -CCUAGGUg----------UCGUCCUCG----UCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 82345 0.75 0.552932
Target:  5'- cGGGUa-GCGGUGGGcguGCGGGGGCGGCg -3'
miRNA:   3'- -CCUAggUGUCGUCCu--CGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 83754 0.75 0.572569
Target:  5'- cGAUCUuccgGCGGCAGGuGCAGaaGACGGCg -3'
miRNA:   3'- cCUAGG----UGUCGUCCuCGUCc-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 25202 0.76 0.514321
Target:  5'- -cGUCCGCcGCGacGGAGCGGGAGCGaGCc -3'
miRNA:   3'- ccUAGGUGuCGU--CCUCGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 33018 0.76 0.504836
Target:  5'- -cAUCCGCGGCAGagcgacGGGCAGGucguaGACGGCg -3'
miRNA:   3'- ccUAGGUGUCGUC------CUCGUCC-----UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 152498 0.77 0.495427
Target:  5'- cGGcgCCACGGguGGAGCguuccggggucGGGGucuCGGCg -3'
miRNA:   3'- -CCuaGGUGUCguCCUCG-----------UCCUu--GCCG- -5'
8943 3' -55.4 NC_002512.2 + 80769 0.82 0.273758
Target:  5'- gGGGUCCucGCGGCucGAGgAGGAGCGGCg -3'
miRNA:   3'- -CCUAGG--UGUCGucCUCgUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 85564 0.8 0.327975
Target:  5'- aGGAg--GC-GCGGGAGCGGGAGCGGCc -3'
miRNA:   3'- -CCUaggUGuCGUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 137487 0.8 0.333079
Target:  5'- cGGAUCCAgCAGCGGGAacugcaggaccgacGuCAGGAACGGg -3'
miRNA:   3'- -CCUAGGU-GUCGUCCU--------------C-GUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 44427 0.8 0.342714
Target:  5'- aGGA-CCACGGCgaAGGAGCAGaGGGCGGa -3'
miRNA:   3'- -CCUaGGUGUCG--UCCUCGUC-CUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 120779 0.8 0.35026
Target:  5'- cGGcggCCGuCGGCGGGGGCGgcGGGACGGCg -3'
miRNA:   3'- -CCua-GGU-GUCGUCCUCGU--CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 34937 0.79 0.397975
Target:  5'- cGGggUCGCGGCgacgGGGAGC-GGAGCGGCc -3'
miRNA:   3'- -CCuaGGUGUCG----UCCUCGuCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 3370 0.78 0.440788
Target:  5'- aGGA-CgGCGGCAGGgccgccAGCAGGAcccGCGGCg -3'
miRNA:   3'- -CCUaGgUGUCGUCC------UCGUCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 72243 0.77 0.495427
Target:  5'- aGGAUCUugGugucccGCAGGuGCAGGAagcccuucuucaGCGGCg -3'
miRNA:   3'- -CCUAGGugU------CGUCCuCGUCCU------------UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.