miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 96289 0.66 0.969408
Target:  5'- aGGUCCGCAGgAGGccGGCccgcucGGGucccCGGCg -3'
miRNA:   3'- cCUAGGUGUCgUCC--UCG------UCCuu--GCCG- -5'
8943 3' -55.4 NC_002512.2 + 47819 0.66 0.969408
Target:  5'- cGGAgCCGCGGCuGaGGUcGGcGCGGCu -3'
miRNA:   3'- -CCUaGGUGUCGuCcUCGuCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 228001 0.66 0.96853
Target:  5'- aGGG-CCGgAGCcggacGGGAcGCGGGAcgaggggcgaccggACGGCg -3'
miRNA:   3'- -CCUaGGUgUCG-----UCCU-CGUCCU--------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 87088 0.66 0.96853
Target:  5'- cGGGUCgCGgGGCgacgugcugGGGAGguGGcggaacaucucggaGGCGGCg -3'
miRNA:   3'- -CCUAG-GUgUCG---------UCCUCguCC--------------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 17004 0.66 0.967635
Target:  5'- cGGUCCAUGGCcgccgucuccggAGGAGgGGacgcucggaggggacGGACGGCg -3'
miRNA:   3'- cCUAGGUGUCG------------UCCUCgUC---------------CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 105791 0.66 0.966413
Target:  5'- uGGUCgACGGCGaGGGCGaaGACGGCg -3'
miRNA:   3'- cCUAGgUGUCGUcCUCGUccUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 103699 0.66 0.966413
Target:  5'- cGGA--CGCGGCGGGAGgGGGcGCcGCc -3'
miRNA:   3'- -CCUagGUGUCGUCCUCgUCCuUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 227236 0.66 0.966413
Target:  5'- gGGAggCGCGGCGGacGGGCGGGcaucagGACGaGCg -3'
miRNA:   3'- -CCUagGUGUCGUC--CUCGUCC------UUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 192479 0.66 0.966413
Target:  5'- cGGAUCgAC-GCGcGGA-CGGGGACGcGCu -3'
miRNA:   3'- -CCUAGgUGuCGU-CCUcGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 50039 0.66 0.966413
Target:  5'- gGGcgCgCACAcGCGGGGGCuGGugcuGACGGa -3'
miRNA:   3'- -CCuaG-GUGU-CGUCCUCGuCC----UUGCCg -5'
8943 3' -55.4 NC_002512.2 + 167599 0.66 0.966413
Target:  5'- aGAUCCAUccaggcugccaGGCGGGAucCGGGGugGGa -3'
miRNA:   3'- cCUAGGUG-----------UCGUCCUc-GUCCUugCCg -5'
8943 3' -55.4 NC_002512.2 + 56072 0.66 0.966413
Target:  5'- uGGAgagcaUCCGCAaCAGaucGAGCuGGAagGCGGCc -3'
miRNA:   3'- -CCU-----AGGUGUcGUC---CUCGuCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 117803 0.66 0.966413
Target:  5'- uGGGUCCGC--CAGGcGaCGGGcucGCGGCg -3'
miRNA:   3'- -CCUAGGUGucGUCCuC-GUCCu--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 136110 0.66 0.966413
Target:  5'- cGGcggCCACAGCgacggggaGGGAGaAGGGAaaagaGGCg -3'
miRNA:   3'- -CCua-GGUGUCG--------UCCUCgUCCUUg----CCG- -5'
8943 3' -55.4 NC_002512.2 + 187105 0.66 0.966413
Target:  5'- cGA-CCgACAGCccuacguggaccAGGGGCAGGGGCuGCc -3'
miRNA:   3'- cCUaGG-UGUCG------------UCCUCGUCCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 126157 0.66 0.966413
Target:  5'- aGGAUcgCCGCGGUccGGuuCAGGAucaugGCGGCg -3'
miRNA:   3'- -CCUA--GGUGUCGu-CCucGUCCU-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 122382 0.66 0.966413
Target:  5'- cGGGUCCAgCcGCAGaGAccgcuGCGGGccggucGCGGCg -3'
miRNA:   3'- -CCUAGGU-GuCGUC-CU-----CGUCCu-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 27553 0.66 0.966413
Target:  5'- gGGcgCUaaguaGCGuGUAGGAGUggcGGAGCGGCc -3'
miRNA:   3'- -CCuaGG-----UGU-CGUCCUCGu--CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 14166 0.66 0.966413
Target:  5'- aGGUCUcgACGuGCGGGcagAGCGGGAuGCGGUc -3'
miRNA:   3'- cCUAGG--UGU-CGUCC---UCGUCCU-UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 57844 0.66 0.966103
Target:  5'- cGGAUgaCCcgGCGGguGGGGCGcaugcugccggccGGAcCGGCg -3'
miRNA:   3'- -CCUA--GG--UGUCguCCUCGU-------------CCUuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.