miRNA display CGI


Results 41 - 60 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 75587 0.66 0.526359
Target:  5'- -cGCGGUcgacguGGCgGCUUUCGCGCGCGu- -3'
miRNA:   3'- cuCGCCGu-----CCG-CGAGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 83971 0.66 0.526359
Target:  5'- cGGCGGCGGaUGC-CCgGCGCGgGGc -3'
miRNA:   3'- cUCGCCGUCcGCGaGGgCGCGCgCCu -5'
8943 5' -66 NC_002512.2 + 121889 0.66 0.526359
Target:  5'- -cGCGGgGGaCGCUCggcgaCGCGCGgGGAg -3'
miRNA:   3'- cuCGCCgUCcGCGAGg----GCGCGCgCCU- -5'
8943 5' -66 NC_002512.2 + 45501 0.66 0.54452
Target:  5'- cGGCGGCGGccaCGCcgaaagcgCCCGCG-GCGGGc -3'
miRNA:   3'- cUCGCCGUCc--GCGa-------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 45268 0.66 0.54452
Target:  5'- -cGcCGGCgGGGCGCUCgCGCucgucuCGCGGGu -3'
miRNA:   3'- cuC-GCCG-UCCGCGAGgGCGc-----GCGCCU- -5'
8943 5' -66 NC_002512.2 + 28060 0.66 0.54452
Target:  5'- -cGCGGaAGGaGCcCCCGgGCGCGGc -3'
miRNA:   3'- cuCGCCgUCCgCGaGGGCgCGCGCCu -5'
8943 5' -66 NC_002512.2 + 130334 0.66 0.535413
Target:  5'- aAGCGGUucacGCGcCUCCUGCGCugcaucgaGCGGGa -3'
miRNA:   3'- cUCGCCGuc--CGC-GAGGGCGCG--------CGCCU- -5'
8943 5' -66 NC_002512.2 + 101755 0.66 0.535413
Target:  5'- uGGUGGCccGGGCGCUCC-GuCG-GCGGGa -3'
miRNA:   3'- cUCGCCG--UCCGCGAGGgC-GCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 123713 0.66 0.526359
Target:  5'- cAGCGGUuccGGGUGgaCCUGUGCuCGGAc -3'
miRNA:   3'- cUCGCCG---UCCGCgaGGGCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 22955 0.66 0.531785
Target:  5'- -cGCGGCGGuGUGCcagccguucaucaCCCGCG-GCGGGa -3'
miRNA:   3'- cuCGCCGUC-CGCGa------------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 82325 0.66 0.529974
Target:  5'- aGGGCcGCGGGcCGC-CCCggcggguagcgguggGCGUGCGGGg -3'
miRNA:   3'- -CUCGcCGUCC-GCGaGGG---------------CGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 18534 0.67 0.509322
Target:  5'- cGGGCGGuCAGGcCGCgcgcgucccccagcgCCCGgGCcCGGAc -3'
miRNA:   3'- -CUCGCC-GUCC-GCGa--------------GGGCgCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 110531 0.67 0.517364
Target:  5'- cGAGCGaGUcgccgugaccGGCGUUUCCGCccccGCGCGGGa -3'
miRNA:   3'- -CUCGC-CGu---------CCGCGAGGGCG----CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 116679 0.67 0.473391
Target:  5'- cGGGCG--AGGacccgGCUCCCGCuCGCGGAg -3'
miRNA:   3'- -CUCGCcgUCCg----CGAGGGCGcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 108385 0.67 0.482041
Target:  5'- aGGGCGGgGGGCGagCCCGgUGgGUGGGg -3'
miRNA:   3'- -CUCGCCgUCCGCgaGGGC-GCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 120794 0.67 0.511997
Target:  5'- gGGGCGGCGGGacggcggcggucucuCGgaCCCGgGaCGCGGc -3'
miRNA:   3'- -CUCGCCGUCC---------------GCgaGGGCgC-GCGCCu -5'
8943 5' -66 NC_002512.2 + 121930 0.67 0.499564
Target:  5'- aGGCGGC-GGCGgUCCCGgaccCGCGGc -3'
miRNA:   3'- cUCGCCGuCCGCgAGGGCgc--GCGCCu -5'
8943 5' -66 NC_002512.2 + 109490 0.67 0.508431
Target:  5'- aGGGUgaGGUAGGCGUUgCCCGUcgucuGCGUGGu -3'
miRNA:   3'- -CUCG--CCGUCCGCGA-GGGCG-----CGCGCCu -5'
8943 5' -66 NC_002512.2 + 129318 0.67 0.508431
Target:  5'- cGAGCGcCcGGCGCUUCUGCGUcaCGGAc -3'
miRNA:   3'- -CUCGCcGuCCGCGAGGGCGCGc-GCCU- -5'
8943 5' -66 NC_002512.2 + 95983 0.67 0.499564
Target:  5'- cAGCGGCGgucGGCG-UCCgGCGCcgcgaccgccagGCGGAa -3'
miRNA:   3'- cUCGCCGU---CCGCgAGGgCGCG------------CGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.