miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 226498 1.08 0.000842
Target:  5'- cUCCCCUCGCCGCGGGUCCUGCUGGCGg -3'
miRNA:   3'- -AGGGGAGCGGCGCCCAGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 217773 0.79 0.100822
Target:  5'- gUCCCCgUCGCCG-GGGUCgCggccgGCUGGCGg -3'
miRNA:   3'- -AGGGG-AGCGGCgCCCAG-Ga----CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 68894 0.79 0.11101
Target:  5'- cCCCCUCGCCGgGGcggucGUgCUGCUGGCc -3'
miRNA:   3'- aGGGGAGCGGCgCC-----CAgGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 59477 0.77 0.147273
Target:  5'- -gCCCUCGCCaGCGGGUCUcgagcggccuggaUGCUGGaCGa -3'
miRNA:   3'- agGGGAGCGG-CGCCCAGG-------------ACGACC-GC- -5'
8944 3' -65.1 NC_002512.2 + 126904 0.76 0.154703
Target:  5'- cUUCUCUCGCgGCGGGgggaggCCggGCUGGCGa -3'
miRNA:   3'- -AGGGGAGCGgCGCCCa-----GGa-CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 120856 0.76 0.162093
Target:  5'- cUCCCCUcgaacgCGCCGCGGGUCC-GCaGGaCGa -3'
miRNA:   3'- -AGGGGA------GCGGCGCCCAGGaCGaCC-GC- -5'
8944 3' -65.1 NC_002512.2 + 107217 0.76 0.165906
Target:  5'- gCCCCUCGCCGUcaccuGGUUCUGC-GGCGc -3'
miRNA:   3'- aGGGGAGCGGCGc----CCAGGACGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 105040 0.74 0.20865
Target:  5'- -gUCCUCGUCGCGGG-CCUcGCUcGGCGa -3'
miRNA:   3'- agGGGAGCGGCGCCCaGGA-CGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 116638 0.74 0.233399
Target:  5'- cCCCCUCGCUGcCGaGGcUCCUGCUGcCGu -3'
miRNA:   3'- aGGGGAGCGGC-GC-CC-AGGACGACcGC- -5'
8944 3' -65.1 NC_002512.2 + 185466 0.73 0.266305
Target:  5'- cUCCUUCGCCGU-GGUCCUGCcgccgcaggucaUGGCGc -3'
miRNA:   3'- aGGGGAGCGGCGcCCAGGACG------------ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 220002 0.73 0.272141
Target:  5'- cCCCCUCGCCcgGCGGGUCgaGa-GGCc -3'
miRNA:   3'- aGGGGAGCGG--CGCCCAGgaCgaCCGc -5'
8944 3' -65.1 NC_002512.2 + 96208 0.72 0.290265
Target:  5'- gCCaCCguggCGuuGCGGGUCgcguuCUGCUGGCa -3'
miRNA:   3'- aGG-GGa---GCggCGCCCAG-----GACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 135321 0.72 0.305436
Target:  5'- gUCCCCgaggucggcgucaGCCGCgccgGGGUgCUGCUGGCc -3'
miRNA:   3'- -AGGGGag-----------CGGCG----CCCAgGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 215637 0.71 0.329318
Target:  5'- gCUCUUCGCCGUGGGg-CUGCgGGCc -3'
miRNA:   3'- aGGGGAGCGGCGCCCagGACGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 155341 0.71 0.329318
Target:  5'- cUCCCgUCGCCGCGGccgCCUgGCUguaccucgucaGGCGg -3'
miRNA:   3'- -AGGGgAGCGGCGCCca-GGA-CGA-----------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 69765 0.71 0.336192
Target:  5'- gCCaCCUCGCC-CaGGUCCUGCUccaccgucugGGCGu -3'
miRNA:   3'- aGG-GGAGCGGcGcCCAGGACGA----------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 27677 0.71 0.350252
Target:  5'- aCCCCguaUC-CCGCGGGUCC-GUcGGCGa -3'
miRNA:   3'- aGGGG---AGcGGCGCCCAGGaCGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 189525 0.71 0.357437
Target:  5'- gCCCgggCUCGCCGCGGucggcGUCCgcggcaucUGCUGGUGc -3'
miRNA:   3'- aGGG---GAGCGGCGCC-----CAGG--------ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 122681 0.7 0.364725
Target:  5'- cUCCCCg-GCCGCGGc-CCgGCUGGUGc -3'
miRNA:   3'- -AGGGGagCGGCGCCcaGGaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 147469 0.7 0.364725
Target:  5'- gUCCCCUcCGCCGCGGGaCCaccgGCUcccccGCGc -3'
miRNA:   3'- -AGGGGA-GCGGCGCCCaGGa---CGAc----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.