miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 2288 0.67 0.557323
Target:  5'- cCUCCggcCGCUGCGGGUggcggggcUCUGCUgcgccGGCGg -3'
miRNA:   3'- aGGGGa--GCGGCGCCCA--------GGACGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 2562 0.68 0.503145
Target:  5'- gUCCCCUuccucgggCGCCgGCGcGUCUcccccaUGCUGGCGc -3'
miRNA:   3'- -AGGGGA--------GCGG-CGCcCAGG------ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 8452 0.69 0.418544
Target:  5'- gCCCCg-GCCGC-GGUCC-GCaUGGCGg -3'
miRNA:   3'- aGGGGagCGGCGcCCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 9210 0.67 0.539044
Target:  5'- gUCCCgUCGCCcagcacgacgcgGCGGG-CCaGgUGGCGc -3'
miRNA:   3'- -AGGGgAGCGG------------CGCCCaGGaCgACCGC- -5'
8944 3' -65.1 NC_002512.2 + 12597 0.68 0.468325
Target:  5'- aUCUCC-CGgCGCGcGGUCC-GCaUGGCGg -3'
miRNA:   3'- -AGGGGaGCgGCGC-CCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 13655 0.68 0.468325
Target:  5'- aCCgUCUCGCCGCGGcUCCaGCUcccggacgaGGCGa -3'
miRNA:   3'- aGG-GGAGCGGCGCCcAGGaCGA---------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 14754 0.66 0.622399
Target:  5'- cUCCCC-CGUCGCGcGGaccccggCCguuCUGGCGg -3'
miRNA:   3'- -AGGGGaGCGGCGC-CCa------GGac-GACCGC- -5'
8944 3' -65.1 NC_002512.2 + 24911 0.7 0.402678
Target:  5'- gUCCCCgUCGcCCGCGGcGUCggGCUcGGCc -3'
miRNA:   3'- -AGGGG-AGC-GGCGCC-CAGgaCGA-CCGc -5'
8944 3' -65.1 NC_002512.2 + 27677 0.71 0.350252
Target:  5'- aCCCCguaUC-CCGCGGGUCC-GUcGGCGa -3'
miRNA:   3'- aGGGG---AGcGGCGCCCAGGaCGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 29650 0.68 0.503145
Target:  5'- gUCCCCgUCGUCGuCGGGcUCCUcggGCUccGGCu -3'
miRNA:   3'- -AGGGG-AGCGGC-GCCC-AGGA---CGA--CCGc -5'
8944 3' -65.1 NC_002512.2 + 44331 0.7 0.387198
Target:  5'- gUCCCCUcgacggccaCGCCGCGGGgCCgGUaGGCc -3'
miRNA:   3'- -AGGGGA---------GCGGCGCCCaGGaCGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 46990 0.68 0.520974
Target:  5'- gCgCC-CGCCGagaGGGgccgcuUCUUGCUGGCGg -3'
miRNA:   3'- aGgGGaGCGGCg--CCC------AGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 47815 0.66 0.603691
Target:  5'- aCCCCggaGCCGCGgcugaGGUCggcgcgGCUGGCc -3'
miRNA:   3'- aGGGGag-CGGCGC-----CCAGga----CGACCGc -5'
8944 3' -65.1 NC_002512.2 + 50505 0.66 0.59436
Target:  5'- aUCCCCgaggCGauGauGGaCCUGCUGGUGg -3'
miRNA:   3'- -AGGGGa---GCggCgcCCaGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 52760 0.66 0.603691
Target:  5'- -----aCG-CGCGGGcCCUGCUGGCGc -3'
miRNA:   3'- aggggaGCgGCGCCCaGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 59477 0.77 0.147273
Target:  5'- -gCCCUCGCCaGCGGGUCUcgagcggccuggaUGCUGGaCGa -3'
miRNA:   3'- agGGGAGCGG-CGCCCAGG-------------ACGACC-GC- -5'
8944 3' -65.1 NC_002512.2 + 61760 0.67 0.539044
Target:  5'- gCCCCUCGCCGCGG--CCg---GGCc -3'
miRNA:   3'- aGGGGAGCGGCGCCcaGGacgaCCGc -5'
8944 3' -65.1 NC_002512.2 + 65394 0.68 0.503145
Target:  5'- uUCCCCUgGgaCGUGGaGUCCUcguaGCUcGGCGg -3'
miRNA:   3'- -AGGGGAgCg-GCGCC-CAGGA----CGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 67771 0.66 0.613039
Target:  5'- gUCUCCggCGCCG-GGGUCgUcggugaGCUGGCc -3'
miRNA:   3'- -AGGGGa-GCGGCgCCCAGgA------CGACCGc -5'
8944 3' -65.1 NC_002512.2 + 68894 0.79 0.11101
Target:  5'- cCCCCUCGCCGgGGcggucGUgCUGCUGGCc -3'
miRNA:   3'- aGGGGAGCGGCgCC-----CAgGACGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.