Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8944 | 3' | -65.1 | NC_002512.2 | + | 69049 | 0.68 | 0.503145 |
Target: 5'- -gCCCagCGCCGCcGGccgcccgCCUGCUGGUGc -3' miRNA: 3'- agGGGa-GCGGCGcCCa------GGACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 127436 | 0.69 | 0.426619 |
Target: 5'- cUCCuCCgcgaCGCCauGCGGGUCCaGCUGGa- -3' miRNA: 3'- -AGG-GGa---GCGG--CGCCCAGGaCGACCgc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 99794 | 0.69 | 0.459813 |
Target: 5'- gCCCUUCacucgGCCGuCGGGUacuaCgaGCUGGCGg -3' miRNA: 3'- aGGGGAG-----CGGC-GCCCA----GgaCGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 13655 | 0.68 | 0.468325 |
Target: 5'- aCCgUCUCGCCGCGGcUCCaGCUcccggacgaGGCGa -3' miRNA: 3'- aGG-GGAGCGGCGCCcAGGaCGA---------CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 12597 | 0.68 | 0.468325 |
Target: 5'- aUCUCC-CGgCGCGcGGUCC-GCaUGGCGg -3' miRNA: 3'- -AGGGGaGCgGCGC-CCAGGaCG-ACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 80482 | 0.68 | 0.476054 |
Target: 5'- gUCCCCUCGCgGCccgucgaggagccGGaGUCCUGCguccccGCGc -3' miRNA: 3'- -AGGGGAGCGgCG-------------CC-CAGGACGac----CGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 2562 | 0.68 | 0.503145 |
Target: 5'- gUCCCCUuccucgggCGCCgGCGcGUCUcccccaUGCUGGCGc -3' miRNA: 3'- -AGGGGA--------GCGG-CGCcCAGG------ACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 29650 | 0.68 | 0.503145 |
Target: 5'- gUCCCCgUCGUCGuCGGGcUCCUcggGCUccGGCu -3' miRNA: 3'- -AGGGG-AGCGGC-GCCC-AGGA---CGA--CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 65394 | 0.68 | 0.503145 |
Target: 5'- uUCCCCUgGgaCGUGGaGUCCUcguaGCUcGGCGg -3' miRNA: 3'- -AGGGGAgCg-GCGCC-CAGGA----CGA-CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 8452 | 0.69 | 0.418544 |
Target: 5'- gCCCCg-GCCGC-GGUCC-GCaUGGCGg -3' miRNA: 3'- aGGGGagCGGCGcCCAGGaCG-ACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 24911 | 0.7 | 0.402678 |
Target: 5'- gUCCCCgUCGcCCGCGGcGUCggGCUcGGCc -3' miRNA: 3'- -AGGGG-AGC-GGCGCC-CAGgaCGA-CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 44331 | 0.7 | 0.387198 |
Target: 5'- gUCCCCUcgacggccaCGCCGCGGGgCCgGUaGGCc -3' miRNA: 3'- -AGGGGA---------GCGGCGCCCaGGaCGaCCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 107217 | 0.76 | 0.165906 |
Target: 5'- gCCCCUCGCCGUcaccuGGUUCUGC-GGCGc -3' miRNA: 3'- aGGGGAGCGGCGc----CCAGGACGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 105040 | 0.74 | 0.20865 |
Target: 5'- -gUCCUCGUCGCGGG-CCUcGCUcGGCGa -3' miRNA: 3'- agGGGAGCGGCGCCCaGGA-CGA-CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 116638 | 0.74 | 0.233399 |
Target: 5'- cCCCCUCGCUGcCGaGGcUCCUGCUGcCGu -3' miRNA: 3'- aGGGGAGCGGC-GC-CC-AGGACGACcGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 96208 | 0.72 | 0.290265 |
Target: 5'- gCCaCCguggCGuuGCGGGUCgcguuCUGCUGGCa -3' miRNA: 3'- aGG-GGa---GCggCGCCCAG-----GACGACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 135321 | 0.72 | 0.305436 |
Target: 5'- gUCCCCgaggucggcgucaGCCGCgccgGGGUgCUGCUGGCc -3' miRNA: 3'- -AGGGGag-----------CGGCG----CCCAgGACGACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 69765 | 0.71 | 0.336192 |
Target: 5'- gCCaCCUCGCC-CaGGUCCUGCUccaccgucugGGCGu -3' miRNA: 3'- aGG-GGAGCGGcGcCCAGGACGA----------CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 27677 | 0.71 | 0.350252 |
Target: 5'- aCCCCguaUC-CCGCGGGUCC-GUcGGCGa -3' miRNA: 3'- aGGGG---AGcGGCGCCCAGGaCGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 122681 | 0.7 | 0.364725 |
Target: 5'- cUCCCCg-GCCGCGGc-CCgGCUGGUGc -3' miRNA: 3'- -AGGGGagCGGCGCCcaGGaCGACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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