miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 69049 0.68 0.503145
Target:  5'- -gCCCagCGCCGCcGGccgcccgCCUGCUGGUGc -3'
miRNA:   3'- agGGGa-GCGGCGcCCa------GGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 127436 0.69 0.426619
Target:  5'- cUCCuCCgcgaCGCCauGCGGGUCCaGCUGGa- -3'
miRNA:   3'- -AGG-GGa---GCGG--CGCCCAGGaCGACCgc -5'
8944 3' -65.1 NC_002512.2 + 99794 0.69 0.459813
Target:  5'- gCCCUUCacucgGCCGuCGGGUacuaCgaGCUGGCGg -3'
miRNA:   3'- aGGGGAG-----CGGC-GCCCA----GgaCGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 13655 0.68 0.468325
Target:  5'- aCCgUCUCGCCGCGGcUCCaGCUcccggacgaGGCGa -3'
miRNA:   3'- aGG-GGAGCGGCGCCcAGGaCGA---------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 12597 0.68 0.468325
Target:  5'- aUCUCC-CGgCGCGcGGUCC-GCaUGGCGg -3'
miRNA:   3'- -AGGGGaGCgGCGC-CCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 80482 0.68 0.476054
Target:  5'- gUCCCCUCGCgGCccgucgaggagccGGaGUCCUGCguccccGCGc -3'
miRNA:   3'- -AGGGGAGCGgCG-------------CC-CAGGACGac----CGC- -5'
8944 3' -65.1 NC_002512.2 + 2562 0.68 0.503145
Target:  5'- gUCCCCUuccucgggCGCCgGCGcGUCUcccccaUGCUGGCGc -3'
miRNA:   3'- -AGGGGA--------GCGG-CGCcCAGG------ACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 29650 0.68 0.503145
Target:  5'- gUCCCCgUCGUCGuCGGGcUCCUcggGCUccGGCu -3'
miRNA:   3'- -AGGGG-AGCGGC-GCCC-AGGA---CGA--CCGc -5'
8944 3' -65.1 NC_002512.2 + 65394 0.68 0.503145
Target:  5'- uUCCCCUgGgaCGUGGaGUCCUcguaGCUcGGCGg -3'
miRNA:   3'- -AGGGGAgCg-GCGCC-CAGGA----CGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 8452 0.69 0.418544
Target:  5'- gCCCCg-GCCGC-GGUCC-GCaUGGCGg -3'
miRNA:   3'- aGGGGagCGGCGcCCAGGaCG-ACCGC- -5'
8944 3' -65.1 NC_002512.2 + 24911 0.7 0.402678
Target:  5'- gUCCCCgUCGcCCGCGGcGUCggGCUcGGCc -3'
miRNA:   3'- -AGGGG-AGC-GGCGCC-CAGgaCGA-CCGc -5'
8944 3' -65.1 NC_002512.2 + 44331 0.7 0.387198
Target:  5'- gUCCCCUcgacggccaCGCCGCGGGgCCgGUaGGCc -3'
miRNA:   3'- -AGGGGA---------GCGGCGCCCaGGaCGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 107217 0.76 0.165906
Target:  5'- gCCCCUCGCCGUcaccuGGUUCUGC-GGCGc -3'
miRNA:   3'- aGGGGAGCGGCGc----CCAGGACGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 105040 0.74 0.20865
Target:  5'- -gUCCUCGUCGCGGG-CCUcGCUcGGCGa -3'
miRNA:   3'- agGGGAGCGGCGCCCaGGA-CGA-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 116638 0.74 0.233399
Target:  5'- cCCCCUCGCUGcCGaGGcUCCUGCUGcCGu -3'
miRNA:   3'- aGGGGAGCGGC-GC-CC-AGGACGACcGC- -5'
8944 3' -65.1 NC_002512.2 + 96208 0.72 0.290265
Target:  5'- gCCaCCguggCGuuGCGGGUCgcguuCUGCUGGCa -3'
miRNA:   3'- aGG-GGa---GCggCGCCCAG-----GACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 135321 0.72 0.305436
Target:  5'- gUCCCCgaggucggcgucaGCCGCgccgGGGUgCUGCUGGCc -3'
miRNA:   3'- -AGGGGag-----------CGGCG----CCCAgGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 69765 0.71 0.336192
Target:  5'- gCCaCCUCGCC-CaGGUCCUGCUccaccgucugGGCGu -3'
miRNA:   3'- aGG-GGAGCGGcGcCCAGGACGA----------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 27677 0.71 0.350252
Target:  5'- aCCCCguaUC-CCGCGGGUCC-GUcGGCGa -3'
miRNA:   3'- aGGGG---AGcGGCGCCCAGGaCGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 122681 0.7 0.364725
Target:  5'- cUCCCCg-GCCGCGGc-CCgGCUGGUGc -3'
miRNA:   3'- -AGGGGagCGGCGCCcaGGaCGACCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.