miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 3' -65.1 NC_002512.2 + 52760 0.66 0.603691
Target:  5'- -----aCG-CGCGGGcCCUGCUGGCGc -3'
miRNA:   3'- aggggaGCgGCGCCCaGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 204975 0.66 0.603691
Target:  5'- gCCCgaCGCCGCGGGcgacggggaCCggaagGCgggGGCGa -3'
miRNA:   3'- aGGGgaGCGGCGCCCa--------GGa----CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 135750 0.66 0.603691
Target:  5'- gCCUC-CGCCGCGucauccgcGUCCUggccgacgagagGCUGGCGg -3'
miRNA:   3'- aGGGGaGCGGCGCc-------CAGGA------------CGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 98741 0.66 0.60089
Target:  5'- uUCCUCUCgGCCGCccugccccgccaucGGGUCCUGgCcgucggggGGCa -3'
miRNA:   3'- -AGGGGAG-CGGCG--------------CCCAGGAC-Ga-------CCGc -5'
8944 3' -65.1 NC_002512.2 + 50505 0.66 0.59436
Target:  5'- aUCCCCgaggCGauGauGGaCCUGCUGGUGg -3'
miRNA:   3'- -AGGGGa---GCggCgcCCaGGACGACCGC- -5'
8944 3' -65.1 NC_002512.2 + 217701 0.66 0.59436
Target:  5'- uUCCCCgccggCGUCGaCGaGGUCC-GCUucaggGGCGg -3'
miRNA:   3'- -AGGGGa----GCGGC-GC-CCAGGaCGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 123111 0.66 0.59436
Target:  5'- aCCCCgaccagUCGCCGCGGG-CCgagaGCcGGaCGc -3'
miRNA:   3'- aGGGG------AGCGGCGCCCaGGa---CGaCC-GC- -5'
8944 3' -65.1 NC_002512.2 + 116187 0.66 0.585053
Target:  5'- gUUCCacgCGCUGCGGG-CCagGCaGGCGg -3'
miRNA:   3'- -AGGGga-GCGGCGCCCaGGa-CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 107482 0.66 0.584124
Target:  5'- aUCUCgUCGCCGCGaccggcccgcagcGGUCuCUGC-GGCu -3'
miRNA:   3'- -AGGGgAGCGGCGC-------------CCAG-GACGaCCGc -5'
8944 3' -65.1 NC_002512.2 + 196386 0.67 0.579482
Target:  5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3'
miRNA:   3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 137238 0.67 0.575774
Target:  5'- gUCCCggaucCG-CGCGGGUCCcgGCgccGGCGg -3'
miRNA:   3'- aGGGGa----GCgGCGCCCAGGa-CGa--CCGC- -5'
8944 3' -65.1 NC_002512.2 + 122261 0.67 0.574848
Target:  5'- uUCCCCggcgGCCGCGGGgacgUCCUGgaGcccgucaGCGa -3'
miRNA:   3'- -AGGGGag--CGGCGCCC----AGGACgaC-------CGC- -5'
8944 3' -65.1 NC_002512.2 + 146927 0.67 0.56653
Target:  5'- gCgCCgugCGCCGCGa--CCUGCUGGCc -3'
miRNA:   3'- aGgGGa--GCGGCGCccaGGACGACCGc -5'
8944 3' -65.1 NC_002512.2 + 2288 0.67 0.557323
Target:  5'- cCUCCggcCGCUGCGGGUggcggggcUCUGCUgcgccGGCGg -3'
miRNA:   3'- aGGGGa--GCGGCGCCCA--------GGACGA-----CCGC- -5'
8944 3' -65.1 NC_002512.2 + 194608 0.67 0.555487
Target:  5'- aUCCCUccgccgccgcggccgUCGCCGCGGGggaCCUGCccgUccucuucuccgaucgGGCGg -3'
miRNA:   3'- -AGGGG---------------AGCGGCGCCCa--GGACG---A---------------CCGC- -5'
8944 3' -65.1 NC_002512.2 + 132004 0.67 0.54816
Target:  5'- gCCCCgggCGCCGgGGGgaCCUcgGC-GGCGa -3'
miRNA:   3'- aGGGGa--GCGGCgCCCa-GGA--CGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 175589 0.67 0.54816
Target:  5'- aCCaCgUCGCCguGCGGGUCCUuCgGGUGg -3'
miRNA:   3'- aGG-GgAGCGG--CGCCCAGGAcGaCCGC- -5'
8944 3' -65.1 NC_002512.2 + 184570 0.67 0.54816
Target:  5'- -gCCCUCcgacCCGCGGG-CCgGCagGGCGg -3'
miRNA:   3'- agGGGAGc---GGCGCCCaGGaCGa-CCGC- -5'
8944 3' -65.1 NC_002512.2 + 87083 0.67 0.539044
Target:  5'- uUCCUCggGUCGCGGGgcgaCgUGCUGGgGa -3'
miRNA:   3'- -AGGGGagCGGCGCCCa---GgACGACCgC- -5'
8944 3' -65.1 NC_002512.2 + 61760 0.67 0.539044
Target:  5'- gCCCCUCGCCGCGG--CCg---GGCc -3'
miRNA:   3'- aGGGGAGCGGCGCCcaGGacgaCCGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.