Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8944 | 3' | -65.1 | NC_002512.2 | + | 52760 | 0.66 | 0.603691 |
Target: 5'- -----aCG-CGCGGGcCCUGCUGGCGc -3' miRNA: 3'- aggggaGCgGCGCCCaGGACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 204975 | 0.66 | 0.603691 |
Target: 5'- gCCCgaCGCCGCGGGcgacggggaCCggaagGCgggGGCGa -3' miRNA: 3'- aGGGgaGCGGCGCCCa--------GGa----CGa--CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 135750 | 0.66 | 0.603691 |
Target: 5'- gCCUC-CGCCGCGucauccgcGUCCUggccgacgagagGCUGGCGg -3' miRNA: 3'- aGGGGaGCGGCGCc-------CAGGA------------CGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 98741 | 0.66 | 0.60089 |
Target: 5'- uUCCUCUCgGCCGCccugccccgccaucGGGUCCUGgCcgucggggGGCa -3' miRNA: 3'- -AGGGGAG-CGGCG--------------CCCAGGAC-Ga-------CCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 50505 | 0.66 | 0.59436 |
Target: 5'- aUCCCCgaggCGauGauGGaCCUGCUGGUGg -3' miRNA: 3'- -AGGGGa---GCggCgcCCaGGACGACCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 217701 | 0.66 | 0.59436 |
Target: 5'- uUCCCCgccggCGUCGaCGaGGUCC-GCUucaggGGCGg -3' miRNA: 3'- -AGGGGa----GCGGC-GC-CCAGGaCGA-----CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 123111 | 0.66 | 0.59436 |
Target: 5'- aCCCCgaccagUCGCCGCGGG-CCgagaGCcGGaCGc -3' miRNA: 3'- aGGGG------AGCGGCGCCCaGGa---CGaCC-GC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 116187 | 0.66 | 0.585053 |
Target: 5'- gUUCCacgCGCUGCGGG-CCagGCaGGCGg -3' miRNA: 3'- -AGGGga-GCGGCGCCCaGGa-CGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 107482 | 0.66 | 0.584124 |
Target: 5'- aUCUCgUCGCCGCGaccggcccgcagcGGUCuCUGC-GGCu -3' miRNA: 3'- -AGGGgAGCGGCGC-------------CCAG-GACGaCCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 196386 | 0.67 | 0.579482 |
Target: 5'- aCUUCgggaCGCCGCGGGUCUgGCgcggggacgcggggGGCGg -3' miRNA: 3'- aGGGGa---GCGGCGCCCAGGaCGa-------------CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 137238 | 0.67 | 0.575774 |
Target: 5'- gUCCCggaucCG-CGCGGGUCCcgGCgccGGCGg -3' miRNA: 3'- aGGGGa----GCgGCGCCCAGGa-CGa--CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 122261 | 0.67 | 0.574848 |
Target: 5'- uUCCCCggcgGCCGCGGGgacgUCCUGgaGcccgucaGCGa -3' miRNA: 3'- -AGGGGag--CGGCGCCC----AGGACgaC-------CGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 146927 | 0.67 | 0.56653 |
Target: 5'- gCgCCgugCGCCGCGa--CCUGCUGGCc -3' miRNA: 3'- aGgGGa--GCGGCGCccaGGACGACCGc -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 2288 | 0.67 | 0.557323 |
Target: 5'- cCUCCggcCGCUGCGGGUggcggggcUCUGCUgcgccGGCGg -3' miRNA: 3'- aGGGGa--GCGGCGCCCA--------GGACGA-----CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 194608 | 0.67 | 0.555487 |
Target: 5'- aUCCCUccgccgccgcggccgUCGCCGCGGGggaCCUGCccgUccucuucuccgaucgGGCGg -3' miRNA: 3'- -AGGGG---------------AGCGGCGCCCa--GGACG---A---------------CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 132004 | 0.67 | 0.54816 |
Target: 5'- gCCCCgggCGCCGgGGGgaCCUcgGC-GGCGa -3' miRNA: 3'- aGGGGa--GCGGCgCCCa-GGA--CGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 175589 | 0.67 | 0.54816 |
Target: 5'- aCCaCgUCGCCguGCGGGUCCUuCgGGUGg -3' miRNA: 3'- aGG-GgAGCGG--CGCCCAGGAcGaCCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 184570 | 0.67 | 0.54816 |
Target: 5'- -gCCCUCcgacCCGCGGG-CCgGCagGGCGg -3' miRNA: 3'- agGGGAGc---GGCGCCCaGGaCGa-CCGC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 87083 | 0.67 | 0.539044 |
Target: 5'- uUCCUCggGUCGCGGGgcgaCgUGCUGGgGa -3' miRNA: 3'- -AGGGGagCGGCGCCCa---GgACGACCgC- -5' |
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8944 | 3' | -65.1 | NC_002512.2 | + | 61760 | 0.67 | 0.539044 |
Target: 5'- gCCCCUCGCCGCGG--CCg---GGCc -3' miRNA: 3'- aGGGGAGCGGCGCCcaGGacgaCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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