miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 127057 0.66 0.952052
Target:  5'- cCGUCUCcucgCgGACGUGcguCUUCUGCGc -3'
miRNA:   3'- aGCAGAGa---GgCUGCGCu--GAGGACGCu -5'
8945 3' -57.1 NC_002512.2 + 141713 0.66 0.939483
Target:  5'- cUCGUC-C-CgGACGCGACcgUCCcggGCGAc -3'
miRNA:   3'- -AGCAGaGaGgCUGCGCUG--AGGa--CGCU- -5'
8945 3' -57.1 NC_002512.2 + 217635 0.66 0.939483
Target:  5'- -gGUCUCgugCUGAUGCGGauggCCUGCu- -3'
miRNA:   3'- agCAGAGa--GGCUGCGCUga--GGACGcu -5'
8945 3' -57.1 NC_002512.2 + 106289 0.66 0.934863
Target:  5'- -aGUCUUUCCGcCGCGGCgUCCUcucagacccgcaGCGc -3'
miRNA:   3'- agCAGAGAGGCuGCGCUG-AGGA------------CGCu -5'
8945 3' -57.1 NC_002512.2 + 38238 0.66 0.934863
Target:  5'- aCGUCUCcgCCGuCcUGGCUCCgaucggGCGAg -3'
miRNA:   3'- aGCAGAGa-GGCuGcGCUGAGGa-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 147983 0.66 0.937661
Target:  5'- -gGUCUaUCCGACGUuucuuGACUCCgggagggaaaacgGCGAg -3'
miRNA:   3'- agCAGAgAGGCUGCG-----CUGAGGa------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 127259 0.66 0.939483
Target:  5'- -gGUCcugCUCCGGgugcugUGCGACUCCacggacgGCGAg -3'
miRNA:   3'- agCAGa--GAGGCU------GCGCUGAGGa------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 189174 0.66 0.939483
Target:  5'- gCGUCUCaguUCCGACGCGuCaaagaUCUGCa- -3'
miRNA:   3'- aGCAGAG---AGGCUGCGCuGa----GGACGcu -5'
8945 3' -57.1 NC_002512.2 + 95253 0.66 0.948076
Target:  5'- gCGUC-CggagggCCG-CGCGGCUCCUgaacgGCGGg -3'
miRNA:   3'- aGCAGaGa-----GGCuGCGCUGAGGA-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 154685 0.66 0.939483
Target:  5'- cCGUCcgCUCCGA-GCGGCcgUCCgGCGu -3'
miRNA:   3'- aGCAGa-GAGGCUgCGCUG--AGGaCGCu -5'
8945 3' -57.1 NC_002512.2 + 215464 0.66 0.943887
Target:  5'- -gGUCaUCgCCGGCGuCGACUCCUccugGCGc -3'
miRNA:   3'- agCAG-AGaGGCUGC-GCUGAGGA----CGCu -5'
8945 3' -57.1 NC_002512.2 + 5754 0.66 0.952052
Target:  5'- cCGcCUC-CCGGCGCGGgUCCacgGcCGAg -3'
miRNA:   3'- aGCaGAGaGGCUGCGCUgAGGa--C-GCU- -5'
8945 3' -57.1 NC_002512.2 + 188774 0.66 0.952052
Target:  5'- gCGg--UUCCGGCgGCGGCUCCggccucgGCGGc -3'
miRNA:   3'- aGCagaGAGGCUG-CGCUGAGGa------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 56676 0.66 0.951664
Target:  5'- --cUCUCUCCGGCaagauggGCGAUUCCggUGCa- -3'
miRNA:   3'- agcAGAGAGGCUG-------CGCUGAGG--ACGcu -5'
8945 3' -57.1 NC_002512.2 + 78277 0.66 0.950487
Target:  5'- aCGUUguUCUCCGACGCGcggaccgugucguCUCguuuccgcgaCUGCGAg -3'
miRNA:   3'- aGCAG--AGAGGCUGCGCu------------GAG----------GACGCU- -5'
8945 3' -57.1 NC_002512.2 + 108168 0.66 0.948076
Target:  5'- gCGUCg--CCGGCGC--CUUCUGCGGc -3'
miRNA:   3'- aGCAGagaGGCUGCGcuGAGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 218399 0.66 0.948076
Target:  5'- gUCGUcCUCUCCGuCGuCGuCgUCCUcGCGGu -3'
miRNA:   3'- -AGCA-GAGAGGCuGC-GCuG-AGGA-CGCU- -5'
8945 3' -57.1 NC_002512.2 + 77968 0.66 0.950881
Target:  5'- uUCGUCUCggggaCCGACGaCGGCaugCCUaccggaaacgauccGCGGa -3'
miRNA:   3'- -AGCAGAGa----GGCUGC-GCUGa--GGA--------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 201817 0.66 0.943887
Target:  5'- cCGUCUCcgCCG-CGCccgggGGCUCCUuccGCGGc -3'
miRNA:   3'- aGCAGAGa-GGCuGCG-----CUGAGGA---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 98072 0.66 0.952052
Target:  5'- cUCGUCUC-CCGGgaCGugUCCgaGCGGa -3'
miRNA:   3'- -AGCAGAGaGGCUgcGCugAGGa-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.