miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 225869 1.09 0.00427
Target:  5'- gUCGUCUCUCCGACGCGACUCCUGCGAc -3'
miRNA:   3'- -AGCAGAGAGGCUGCGCUGAGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 94671 0.74 0.552557
Target:  5'- gUCGgcacgCUCUCCGGCGCGcagcugccCUCgUGCGAc -3'
miRNA:   3'- -AGCa----GAGAGGCUGCGCu-------GAGgACGCU- -5'
8945 3' -57.1 NC_002512.2 + 168952 0.74 0.591155
Target:  5'- cUCG-CUCUCCGACGCGaagcGCUUC-GCGGu -3'
miRNA:   3'- -AGCaGAGAGGCUGCGC----UGAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 175824 0.72 0.669233
Target:  5'- cCG-CUCgUCCGugGCGcCUCCUGCc- -3'
miRNA:   3'- aGCaGAG-AGGCugCGCuGAGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 133361 0.71 0.736203
Target:  5'- cCGgCUCacaccgCCGGCGCGGCUCCcuccgGCGGu -3'
miRNA:   3'- aGCaGAGa-----GGCUGCGCUGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 81413 0.71 0.754714
Target:  5'- cUCGUcCUCcccgCCGuCGCGGCUCCgucccGCGGg -3'
miRNA:   3'- -AGCA-GAGa---GGCuGCGCUGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 153613 0.7 0.807625
Target:  5'- cCGUCUCgUCCGuCGUGACuaaUCCUucgGCGGa -3'
miRNA:   3'- aGCAGAG-AGGCuGCGCUG---AGGA---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 171799 0.7 0.807625
Target:  5'- cUCGUCccgaCGGCGCGcGCUCCUGCu- -3'
miRNA:   3'- -AGCAGagagGCUGCGC-UGAGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 3488 0.69 0.81598
Target:  5'- aUCGUCg--CCG-C-CGACUCCUGCGu -3'
miRNA:   3'- -AGCAGagaGGCuGcGCUGAGGACGCu -5'
8945 3' -57.1 NC_002512.2 + 172685 0.69 0.81598
Target:  5'- cUCGUCUCcgUCCuGCGCGACcgcugCC-GCGAg -3'
miRNA:   3'- -AGCAGAG--AGGcUGCGCUGa----GGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 105128 0.69 0.81598
Target:  5'- gUCGUCUgggCCGACGaCGGCUCCa-CGAa -3'
miRNA:   3'- -AGCAGAga-GGCUGC-GCUGAGGacGCU- -5'
8945 3' -57.1 NC_002512.2 + 109001 0.69 0.81598
Target:  5'- cUCGUCggcgCCGGCgGCGuCgUCCUGCGGa -3'
miRNA:   3'- -AGCAGaga-GGCUG-CGCuG-AGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 192985 0.69 0.832224
Target:  5'- -gGUC-CUCCGGCGCG-CUCUggaccGCGGg -3'
miRNA:   3'- agCAGaGAGGCUGCGCuGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 155563 0.69 0.838539
Target:  5'- aCGUCggacuaugggacCUCUGACGCGGuCUCgCUGCGu -3'
miRNA:   3'- aGCAGa-----------GAGGCUGCGCU-GAG-GACGCu -5'
8945 3' -57.1 NC_002512.2 + 107338 0.69 0.847805
Target:  5'- aCGUC-CUCCGuCGCGGCgagCCUGa-- -3'
miRNA:   3'- aGCAGaGAGGCuGCGCUGa--GGACgcu -5'
8945 3' -57.1 NC_002512.2 + 143228 0.68 0.862671
Target:  5'- cCGUCcgCUCgGACGCGGCcaCC-GCGAu -3'
miRNA:   3'- aGCAGa-GAGgCUGCGCUGa-GGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 34833 0.68 0.869822
Target:  5'- --uUCUCUCCGACGCucauaaacggucGACacgCaCUGCGAa -3'
miRNA:   3'- agcAGAGAGGCUGCG------------CUGa--G-GACGCU- -5'
8945 3' -57.1 NC_002512.2 + 158804 0.68 0.883536
Target:  5'- gUCGUCgacuUCUCgGcCGCGAa-CCUGCGGg -3'
miRNA:   3'- -AGCAG----AGAGgCuGCGCUgaGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 218525 0.68 0.890089
Target:  5'- cUCGUCg-UCCGACGCGAacagUUUGCGc -3'
miRNA:   3'- -AGCAGagAGGCUGCGCUga--GGACGCu -5'
8945 3' -57.1 NC_002512.2 + 132514 0.67 0.896436
Target:  5'- cCGUCUCcggCCGcCGCGguccccGCUCCgcggGCGGc -3'
miRNA:   3'- aGCAGAGa--GGCuGCGC------UGAGGa---CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.