miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 315 0.67 0.908496
Target:  5'- cCGUCcCUcCCGGCGCGcGCUCCUccgccgGCGc -3'
miRNA:   3'- aGCAGaGA-GGCUGCGC-UGAGGA------CGCu -5'
8945 3' -57.1 NC_002512.2 + 3488 0.69 0.81598
Target:  5'- aUCGUCg--CCG-C-CGACUCCUGCGu -3'
miRNA:   3'- -AGCAGagaGGCuGcGCUGAGGACGCu -5'
8945 3' -57.1 NC_002512.2 + 5754 0.66 0.952052
Target:  5'- cCGcCUC-CCGGCGCGGgUCCacgGcCGAg -3'
miRNA:   3'- aGCaGAGaGGCUGCGCUgAGGa--C-GCU- -5'
8945 3' -57.1 NC_002512.2 + 34833 0.68 0.869822
Target:  5'- --uUCUCUCCGACGCucauaaacggucGACacgCaCUGCGAa -3'
miRNA:   3'- agcAGAGAGGCUGCG------------CUGa--G-GACGCU- -5'
8945 3' -57.1 NC_002512.2 + 38238 0.66 0.934863
Target:  5'- aCGUCUCcgCCGuCcUGGCUCCgaucggGCGAg -3'
miRNA:   3'- aGCAGAGa-GGCuGcGCUGAGGa-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 56676 0.66 0.951664
Target:  5'- --cUCUCUCCGGCaagauggGCGAUUCCggUGCa- -3'
miRNA:   3'- agcAGAGAGGCUG-------CGCUGAGG--ACGcu -5'
8945 3' -57.1 NC_002512.2 + 77968 0.66 0.950881
Target:  5'- uUCGUCUCggggaCCGACGaCGGCaugCCUaccggaaacgauccGCGGa -3'
miRNA:   3'- -AGCAGAGa----GGCUGC-GCUGa--GGA--------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 78277 0.66 0.950487
Target:  5'- aCGUUguUCUCCGACGCGcggaccgugucguCUCguuuccgcgaCUGCGAg -3'
miRNA:   3'- aGCAG--AGAGGCUGCGCu------------GAG----------GACGCU- -5'
8945 3' -57.1 NC_002512.2 + 81413 0.71 0.754714
Target:  5'- cUCGUcCUCcccgCCGuCGCGGCUCCgucccGCGGg -3'
miRNA:   3'- -AGCA-GAGa---GGCuGCGCUGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 91297 0.67 0.902572
Target:  5'- gCGUCUCcCCGGcCGCGAUccgcagcguggUCUGCGAc -3'
miRNA:   3'- aGCAGAGaGGCU-GCGCUGa----------GGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 94671 0.74 0.552557
Target:  5'- gUCGgcacgCUCUCCGGCGCGcagcugccCUCgUGCGAc -3'
miRNA:   3'- -AGCa----GAGAGGCUGCGCu-------GAGgACGCU- -5'
8945 3' -57.1 NC_002512.2 + 95253 0.66 0.948076
Target:  5'- gCGUC-CggagggCCG-CGCGGCUCCUgaacgGCGGg -3'
miRNA:   3'- aGCAGaGa-----GGCuGCGCUGAGGA-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 98072 0.66 0.952052
Target:  5'- cUCGUCUC-CCGGgaCGugUCCgaGCGGa -3'
miRNA:   3'- -AGCAGAGaGGCUgcGCugAGGa-CGCU- -5'
8945 3' -57.1 NC_002512.2 + 98830 0.67 0.908496
Target:  5'- aUCGgC-CUCCGGCGCGGCgccgUCCUcccccGCGGc -3'
miRNA:   3'- -AGCaGaGAGGCUGCGCUG----AGGA-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 105128 0.69 0.81598
Target:  5'- gUCGUCUgggCCGACGaCGGCUCCa-CGAa -3'
miRNA:   3'- -AGCAGAga-GGCUGC-GCUGAGGacGCU- -5'
8945 3' -57.1 NC_002512.2 + 106289 0.66 0.934863
Target:  5'- -aGUCUUUCCGcCGCGGCgUCCUcucagacccgcaGCGc -3'
miRNA:   3'- agCAGAGAGGCuGCGCUG-AGGA------------CGCu -5'
8945 3' -57.1 NC_002512.2 + 107338 0.69 0.847805
Target:  5'- aCGUC-CUCCGuCGCGGCgagCCUGa-- -3'
miRNA:   3'- aGCAGaGAGGCuGCGCUGa--GGACgcu -5'
8945 3' -57.1 NC_002512.2 + 108168 0.66 0.948076
Target:  5'- gCGUCg--CCGGCGC--CUUCUGCGGc -3'
miRNA:   3'- aGCAGagaGGCUGCGcuGAGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 108478 0.67 0.896436
Target:  5'- gCGUCUCccuccacgCCaGGCGCGGCUCCguccgGCc- -3'
miRNA:   3'- aGCAGAGa-------GG-CUGCGCUGAGGa----CGcu -5'
8945 3' -57.1 NC_002512.2 + 109001 0.69 0.81598
Target:  5'- cUCGUCggcgCCGGCgGCGuCgUCCUGCGGa -3'
miRNA:   3'- -AGCAGaga-GGCUG-CGCuG-AGGACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.