miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 98072 0.66 0.952052
Target:  5'- cUCGUCUC-CCGGgaCGugUCCgaGCGGa -3'
miRNA:   3'- -AGCAGAGaGGCUgcGCugAGGa-CGCU- -5'
8945 3' -57.1 NC_002512.2 + 229718 0.67 0.908496
Target:  5'- cCGUCcCUcCCGGCGCGcGCUCCUccgccgGCGc -3'
miRNA:   3'- aGCAGaGA-GGCUGCGC-UGAGGA------CGCu -5'
8945 3' -57.1 NC_002512.2 + 152280 0.67 0.914204
Target:  5'- cUCGUCgUUCCGGCgGCGA-UCC-GCGAg -3'
miRNA:   3'- -AGCAGaGAGGCUG-CGCUgAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 106289 0.66 0.934863
Target:  5'- -aGUCUUUCCGcCGCGGCgUCCUcucagacccgcaGCGc -3'
miRNA:   3'- agCAGAGAGGCuGCGCUG-AGGA------------CGCu -5'
8945 3' -57.1 NC_002512.2 + 38238 0.66 0.934863
Target:  5'- aCGUCUCcgCCGuCcUGGCUCCgaucggGCGAg -3'
miRNA:   3'- aGCAGAGa-GGCuGcGCUGAGGa-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 147983 0.66 0.937661
Target:  5'- -gGUCUaUCCGACGUuucuuGACUCCgggagggaaaacgGCGAg -3'
miRNA:   3'- agCAGAgAGGCUGCG-----CUGAGGa------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 127259 0.66 0.939483
Target:  5'- -gGUCcugCUCCGGgugcugUGCGACUCCacggacgGCGAg -3'
miRNA:   3'- agCAGa--GAGGCU------GCGCUGAGGa------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 189174 0.66 0.939483
Target:  5'- gCGUCUCaguUCCGACGCGuCaaagaUCUGCa- -3'
miRNA:   3'- aGCAGAG---AGGCUGCGCuGa----GGACGcu -5'
8945 3' -57.1 NC_002512.2 + 95253 0.66 0.948076
Target:  5'- gCGUC-CggagggCCG-CGCGGCUCCUgaacgGCGGg -3'
miRNA:   3'- aGCAGaGa-----GGCuGCGCUGAGGA-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 315 0.67 0.908496
Target:  5'- cCGUCcCUcCCGGCGCGcGCUCCUccgccgGCGc -3'
miRNA:   3'- aGCAGaGA-GGCUGCGC-UGAGGA------CGCu -5'
8945 3' -57.1 NC_002512.2 + 121592 0.67 0.908496
Target:  5'- -aGUCgaUCUCCGACGCcugcGACUUCUucaggcagcccgGCGAa -3'
miRNA:   3'- agCAG--AGAGGCUGCG----CUGAGGA------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 91297 0.67 0.902572
Target:  5'- gCGUCUCcCCGGcCGCGAUccgcagcguggUCUGCGAc -3'
miRNA:   3'- aGCAGAGaGGCU-GCGCUGa----------GGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 133361 0.71 0.736203
Target:  5'- cCGgCUCacaccgCCGGCGCGGCUCCcuccgGCGGu -3'
miRNA:   3'- aGCaGAGa-----GGCUGCGCUGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 81413 0.71 0.754714
Target:  5'- cUCGUcCUCcccgCCGuCGCGGCUCCgucccGCGGg -3'
miRNA:   3'- -AGCA-GAGa---GGCuGCGCUGAGGa----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 153613 0.7 0.807625
Target:  5'- cCGUCUCgUCCGuCGUGACuaaUCCUucgGCGGa -3'
miRNA:   3'- aGCAGAG-AGGCuGCGCUG---AGGA---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 105128 0.69 0.81598
Target:  5'- gUCGUCUgggCCGACGaCGGCUCCa-CGAa -3'
miRNA:   3'- -AGCAGAga-GGCUGC-GCUGAGGacGCU- -5'
8945 3' -57.1 NC_002512.2 + 109001 0.69 0.81598
Target:  5'- cUCGUCggcgCCGGCgGCGuCgUCCUGCGGa -3'
miRNA:   3'- -AGCAGaga-GGCUG-CGCuG-AGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 155563 0.69 0.838539
Target:  5'- aCGUCggacuaugggacCUCUGACGCGGuCUCgCUGCGu -3'
miRNA:   3'- aGCAGa-----------GAGGCUGCGCU-GAG-GACGCu -5'
8945 3' -57.1 NC_002512.2 + 107338 0.69 0.847805
Target:  5'- aCGUC-CUCCGuCGCGGCgagCCUGa-- -3'
miRNA:   3'- aGCAGaGAGGCuGCGCUGa--GGACgcu -5'
8945 3' -57.1 NC_002512.2 + 108478 0.67 0.896436
Target:  5'- gCGUCUCccuccacgCCaGGCGCGGCUCCguccgGCc- -3'
miRNA:   3'- aGCAGAGa-------GG-CUGCGCUGAGGa----CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.