miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8945 3' -57.1 NC_002512.2 + 222245 0.66 0.934863
Target:  5'- uUCGUCg--CCGugGCGGgUCUcGUGAu -3'
miRNA:   3'- -AGCAGagaGGCugCGCUgAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 106289 0.66 0.934863
Target:  5'- -aGUCUUUCCGcCGCGGCgUCCUcucagacccgcaGCGc -3'
miRNA:   3'- agCAGAGAGGCuGCGCUG-AGGA------------CGCu -5'
8945 3' -57.1 NC_002512.2 + 194647 0.66 0.930025
Target:  5'- cCGUCcucuUCUCCGAUcggGCGG-UCCUGCa- -3'
miRNA:   3'- aGCAG----AGAGGCUG---CGCUgAGGACGcu -5'
8945 3' -57.1 NC_002512.2 + 158318 0.67 0.919696
Target:  5'- -gGUCg-UCCGGCGCGAgUCC-GCGc -3'
miRNA:   3'- agCAGagAGGCUGCGCUgAGGaCGCu -5'
8945 3' -57.1 NC_002512.2 + 201639 0.67 0.919696
Target:  5'- cCGUCguaCUCgCGGCGCGACggccCCggccGCGGu -3'
miRNA:   3'- aGCAGa--GAG-GCUGCGCUGa---GGa---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 207537 0.67 0.919696
Target:  5'- gCGUC-CUCCcGCuGCGACUCCUcccucGCGu -3'
miRNA:   3'- aGCAGaGAGGcUG-CGCUGAGGA-----CGCu -5'
8945 3' -57.1 NC_002512.2 + 222887 0.67 0.914204
Target:  5'- gCGgCUCUCCuGCGacuucgagGGCUCCUGCGu -3'
miRNA:   3'- aGCaGAGAGGcUGCg-------CUGAGGACGCu -5'
8945 3' -57.1 NC_002512.2 + 152280 0.67 0.914204
Target:  5'- cUCGUCgUUCCGGCgGCGA-UCC-GCGAg -3'
miRNA:   3'- -AGCAGaGAGGCUG-CGCUgAGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 98830 0.67 0.908496
Target:  5'- aUCGgC-CUCCGGCGCGGCgccgUCCUcccccGCGGc -3'
miRNA:   3'- -AGCaGaGAGGCUGCGCUG----AGGA-----CGCU- -5'
8945 3' -57.1 NC_002512.2 + 229718 0.67 0.908496
Target:  5'- cCGUCcCUcCCGGCGCGcGCUCCUccgccgGCGc -3'
miRNA:   3'- aGCAGaGA-GGCUGCGC-UGAGGA------CGCu -5'
8945 3' -57.1 NC_002512.2 + 315 0.67 0.908496
Target:  5'- cCGUCcCUcCCGGCGCGcGCUCCUccgccgGCGc -3'
miRNA:   3'- aGCAGaGA-GGCUGCGC-UGAGGA------CGCu -5'
8945 3' -57.1 NC_002512.2 + 121592 0.67 0.908496
Target:  5'- -aGUCgaUCUCCGACGCcugcGACUUCUucaggcagcccgGCGAa -3'
miRNA:   3'- agCAG--AGAGGCUGCG----CUGAGGA------------CGCU- -5'
8945 3' -57.1 NC_002512.2 + 91297 0.67 0.902572
Target:  5'- gCGUCUCcCCGGcCGCGAUccgcagcguggUCUGCGAc -3'
miRNA:   3'- aGCAGAGaGGCU-GCGCUGa----------GGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 207201 0.67 0.902572
Target:  5'- gCGUUggUCUGgaaGCGCGAgUCCUGCGu -3'
miRNA:   3'- aGCAGagAGGC---UGCGCUgAGGACGCu -5'
8945 3' -57.1 NC_002512.2 + 224786 0.67 0.902572
Target:  5'- aUGUCUCUCCcgcccGCGcCGACgCCgGCGAc -3'
miRNA:   3'- aGCAGAGAGGc----UGC-GCUGaGGaCGCU- -5'
8945 3' -57.1 NC_002512.2 + 108478 0.67 0.896436
Target:  5'- gCGUCUCccuccacgCCaGGCGCGGCUCCguccgGCc- -3'
miRNA:   3'- aGCAGAGa-------GG-CUGCGCUGAGGa----CGcu -5'
8945 3' -57.1 NC_002512.2 + 132514 0.67 0.896436
Target:  5'- cCGUCUCcggCCGcCGCGguccccGCUCCgcggGCGGc -3'
miRNA:   3'- aGCAGAGa--GGCuGCGC------UGAGGa---CGCU- -5'
8945 3' -57.1 NC_002512.2 + 218525 0.68 0.890089
Target:  5'- cUCGUCg-UCCGACGCGAacagUUUGCGc -3'
miRNA:   3'- -AGCAGagAGGCUGCGCUga--GGACGCu -5'
8945 3' -57.1 NC_002512.2 + 158804 0.68 0.883536
Target:  5'- gUCGUCgacuUCUCgGcCGCGAa-CCUGCGGg -3'
miRNA:   3'- -AGCAG----AGAGgCuGCGCUgaGGACGCU- -5'
8945 3' -57.1 NC_002512.2 + 34833 0.68 0.869822
Target:  5'- --uUCUCUCCGACGCucauaaacggucGACacgCaCUGCGAa -3'
miRNA:   3'- agcAGAGAGGCUGCG------------CUGa--G-GACGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.