Results 1 - 20 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8945 | 5' | -59.6 | NC_002512.2 | + | 70686 | 0.71 | 0.645576 |
Target: 5'- uUCCCGGGGAccggccgggcggggGACGgGggGACgGGGGGa -3' miRNA: 3'- -AGGGCUCCU--------------CUGCgCagCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 8189 | 0.72 | 0.600934 |
Target: 5'- aCCCGAGGccgaGCGUCG-CCGGGcGGg -3' miRNA: 3'- aGGGCUCCucugCGCAGCuGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 99888 | 0.71 | 0.610417 |
Target: 5'- aCCgGgAGGAGGCGCGgcccgUCGagggcGCCGGGGGc -3' miRNA: 3'- aGGgC-UCCUCUGCGC-----AGC-----UGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 8785 | 0.71 | 0.619913 |
Target: 5'- cUCCCGAGGAGGCGC-----CgGAGGGc -3' miRNA: 3'- -AGGGCUCCUCUGCGcagcuGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 77190 | 0.71 | 0.619913 |
Target: 5'- cCCCGAccGGGGACGCGacgaGACCGGGc- -3' miRNA: 3'- aGGGCU--CCUCUGCGCag--CUGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 58909 | 0.71 | 0.619913 |
Target: 5'- -aCCGAcGGAGAuaaaauugagcCGCGagUCGAUCGAGGGc -3' miRNA: 3'- agGGCU-CCUCU-----------GCGC--AGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 78 | 0.71 | 0.629418 |
Target: 5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3' miRNA: 3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 229482 | 0.71 | 0.629418 |
Target: 5'- gCgCGAGGAGGCGagaGgCGGCgGGGGGa -3' miRNA: 3'- aGgGCUCCUCUGCg--CaGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 24846 | 0.71 | 0.638924 |
Target: 5'- gCCCGcGGccggucggcggcGGACGCGgcccCGACCGAGGc -3' miRNA: 3'- aGGGCuCC------------UCUGCGCa---GCUGGCUCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 22309 | 0.72 | 0.55393 |
Target: 5'- gCCagggagaGGGGAGACGCGaggGACgCGAGGGa -3' miRNA: 3'- aGGg------CUCCUCUGCGCag-CUG-GCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 101645 | 0.73 | 0.535417 |
Target: 5'- gCUCGAGGGGAgCGCGgCGGCCGcGGa -3' miRNA: 3'- aGGGCUCCUCU-GCGCaGCUGGCuCCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 86334 | 0.73 | 0.517126 |
Target: 5'- cCCgCGGGGAGACGCG-CGGCCGccGa -3' miRNA: 3'- aGG-GCUCCUCUGCGCaGCUGGCucCc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 25921 | 0.77 | 0.330879 |
Target: 5'- gUCCaUGAGGucGAugUGCGUCGGCCGGGGGc -3' miRNA: 3'- -AGG-GCUCCu-CU--GCGCAGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 99016 | 0.77 | 0.344988 |
Target: 5'- cCCCGAuaGGGCGCGUCGGC-GAGGGc -3' miRNA: 3'- aGGGCUccUCUGCGCAGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 85559 | 0.76 | 0.359525 |
Target: 5'- gCUCGAGGAGGCGCGggagcgggagCGGCCGGGa- -3' miRNA: 3'- aGGGCUCCUCUGCGCa---------GCUGGCUCcc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 124793 | 0.75 | 0.413682 |
Target: 5'- aCCCGGGGAGACaCGUCGACCcGAc-- -3' miRNA: 3'- aGGGCUCCUCUGcGCAGCUGG-CUccc -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 14043 | 0.75 | 0.446799 |
Target: 5'- uUCCCGAaggcGGcGGCGCGUucCGGCCGGGaGGg -3' miRNA: 3'- -AGGGCU----CCuCUGCGCA--GCUGGCUC-CC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 142050 | 0.74 | 0.490178 |
Target: 5'- gCCgCGAGGGcccGACGCc-CGGCCGGGGGa -3' miRNA: 3'- aGG-GCUCCU---CUGCGcaGCUGGCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 75039 | 0.73 | 0.49909 |
Target: 5'- --aCGAGGGGACGCa-CGACgGAGGGc -3' miRNA: 3'- aggGCUCCUCUGCGcaGCUGgCUCCC- -5' |
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8945 | 5' | -59.6 | NC_002512.2 | + | 142275 | 0.73 | 0.508075 |
Target: 5'- gUCCGGgccGGGGACgGCGUCGACgGGGGa -3' miRNA: 3'- aGGGCU---CCUCUG-CGCAGCUGgCUCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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