miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 3' -56.7 NC_002512.2 + 228613 0.73 0.653327
Target:  5'- gGUGGAggaguccGGUCGUcGUCCGucgacgaGACGGCGAg -3'
miRNA:   3'- -CACCU-------CCAGCA-CAGGCug-----CUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 227616 0.68 0.867005
Target:  5'- -cGGAGGgCG-Gg-CGGCGGCGGCGAg -3'
miRNA:   3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 227517 0.7 0.795277
Target:  5'- -cGGGGGggaGaGUCCGGCGGCGGaCGGg -3'
miRNA:   3'- caCCUCCag-CaCAGGCUGCUGUC-GCU- -5'
8946 3' -56.7 NC_002512.2 + 226723 0.71 0.722172
Target:  5'- -gGGAGGcCGcGggCGACGACGGCGGg -3'
miRNA:   3'- caCCUCCaGCaCagGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 226384 0.72 0.703019
Target:  5'- gGUGGAGGg-----CCGACGACGGCGc -3'
miRNA:   3'- -CACCUCCagcacaGGCUGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 223750 1.09 0.004306
Target:  5'- cGUGGAGGUCGUGUCCGACGACAGCGAg -3'
miRNA:   3'- -CACCUCCAGCACAGGCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 221973 0.71 0.768664
Target:  5'- -cGGAGGUCGUucGaCCGGCGACAuaCGAu -3'
miRNA:   3'- caCCUCCAGCA--CaGGCUGCUGUc-GCU- -5'
8946 3' -56.7 NC_002512.2 + 221598 0.72 0.693356
Target:  5'- -cGGAGGggg-GUCgGugGACGGCGAg -3'
miRNA:   3'- caCCUCCagcaCAGgCugCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 221415 0.7 0.812353
Target:  5'- -cGGcGGGUC-UGUCCGACGGCcgccauGCGGa -3'
miRNA:   3'- caCC-UCCAGcACAGGCUGCUGu-----CGCU- -5'
8946 3' -56.7 NC_002512.2 + 220102 0.68 0.87338
Target:  5'- -aGGAGGUCGaggcGUCCGugagccgccacgcGgGGCGGCGGg -3'
miRNA:   3'- caCCUCCAGCa---CAGGC-------------UgCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 219830 0.71 0.759557
Target:  5'- -aGGGGGUCGgucgggggGUCCGGCccGGgGGCGGa -3'
miRNA:   3'- caCCUCCAGCa-------CAGGCUG--CUgUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 218938 0.7 0.795277
Target:  5'- --cGAGGcCGUGUCUGACGACGaUGAa -3'
miRNA:   3'- cacCUCCaGCACAGGCUGCUGUcGCU- -5'
8946 3' -56.7 NC_002512.2 + 217603 0.67 0.917785
Target:  5'- -cGGGGGUCGU---CGGCGACucgGGCGGc -3'
miRNA:   3'- caCCUCCAGCAcagGCUGCUG---UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 215597 0.7 0.795277
Target:  5'- -gGGAGGacagCGUcGUCCGggucuGCGGCAGCGu -3'
miRNA:   3'- caCCUCCa---GCA-CAGGC-----UGCUGUCGCu -5'
8946 3' -56.7 NC_002512.2 + 212428 0.67 0.928325
Target:  5'- -gGGAGGUCGaGUUCGGgccggcCGGCcGCGAc -3'
miRNA:   3'- caCCUCCAGCaCAGGCU------GCUGuCGCU- -5'
8946 3' -56.7 NC_002512.2 + 209343 0.68 0.894082
Target:  5'- aUGGAGGU-GUGguacgaggUCGGCGACcuGGCGAc -3'
miRNA:   3'- cACCUCCAgCACa-------GGCUGCUG--UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 209131 0.7 0.820668
Target:  5'- -gGGAcuGcGUCGUGggaGACGACGGCGAg -3'
miRNA:   3'- caCCU--C-CAGCACaggCUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 204866 0.71 0.722172
Target:  5'- cGUGGAGGUcCGcGaCCGACGGCgagcucucggacGGCGAg -3'
miRNA:   3'- -CACCUCCA-GCaCaGGCUGCUG------------UCGCU- -5'
8946 3' -56.7 NC_002512.2 + 204820 0.66 0.954683
Target:  5'- -cGGGGGcgCGgcggcuccGUCCgggagGACGACGGCGGu -3'
miRNA:   3'- caCCUCCa-GCa-------CAGG-----CUGCUGUCGCU- -5'
8946 3' -56.7 NC_002512.2 + 201863 0.69 0.828825
Target:  5'- cUGGGGccugCG-GUCCGAgGACGGCGGc -3'
miRNA:   3'- cACCUCca--GCaCAGGCUgCUGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.