Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8946 | 3' | -56.7 | NC_002512.2 | + | 204820 | 0.66 | 0.954683 |
Target: 5'- -cGGGGGcgCGgcggcuccGUCCgggagGACGACGGCGGu -3' miRNA: 3'- caCCUCCa-GCa-------CAGG-----CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 217603 | 0.67 | 0.917785 |
Target: 5'- -cGGGGGUCGU---CGGCGACucgGGCGGc -3' miRNA: 3'- caCCUCCAGCAcagGCUGCUG---UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 161263 | 0.67 | 0.912186 |
Target: 5'- -aGGAGGcgCGggcuuUGcCUGACGugGGCGAg -3' miRNA: 3'- caCCUCCa-GC-----ACaGGCUGCugUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 223750 | 1.09 | 0.004306 |
Target: 5'- cGUGGAGGUCGUGUCCGACGACAGCGAg -3' miRNA: 3'- -CACCUCCAGCACAGGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 96209 | 0.66 | 0.95083 |
Target: 5'- -cGcGAGGUCGgccacggcgGcCgCGGCGGCGGCGGc -3' miRNA: 3'- caC-CUCCAGCa--------CaG-GCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 101912 | 0.66 | 0.949632 |
Target: 5'- -cGGGGGcggCGUGUucuccaugcggggaCCGACGGagAGCGAa -3' miRNA: 3'- caCCUCCa--GCACA--------------GGCUGCUg-UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 170820 | 0.66 | 0.942482 |
Target: 5'- -cGGGGG-CGgcagCGGCGGCAGCGGc -3' miRNA: 3'- caCCUCCaGCacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 108828 | 0.66 | 0.942482 |
Target: 5'- cGUGcGAGGUguaCGgagcGUCCGACGACucCGAg -3' miRNA: 3'- -CAC-CUCCA---GCa---CAGGCUGCUGucGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 187649 | 0.66 | 0.937983 |
Target: 5'- aUGGAGGgcggCGgccacgGUCaCGgucACGGCGGCGGg -3' miRNA: 3'- cACCUCCa---GCa-----CAG-GC---UGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 212428 | 0.67 | 0.928325 |
Target: 5'- -gGGAGGUCGaGUUCGGgccggcCGGCcGCGAc -3' miRNA: 3'- caCCUCCAGCaCAGGCU------GCUGuCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 127095 | 0.66 | 0.937983 |
Target: 5'- -cGGAGGgCGg---CGGCGGCGGCGGg -3' miRNA: 3'- caCCUCCaGCacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 147628 | 0.66 | 0.937983 |
Target: 5'- -cGGGGG-CGa---CGACGACGGCGGc -3' miRNA: 3'- caCCUCCaGCacagGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 156520 | 0.66 | 0.954683 |
Target: 5'- -cGGcGGGgcgCGgggGUCCGGCGGCGG-GAa -3' miRNA: 3'- caCC-UCCa--GCa--CAGGCUGCUGUCgCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 147690 | 0.66 | 0.937983 |
Target: 5'- -gGGAGGaCGccggCCGACGGCGGaCGGg -3' miRNA: 3'- caCCUCCaGCaca-GGCUGCUGUC-GCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 148083 | 0.66 | 0.95083 |
Target: 5'- ----cGGUCGUccGUcccCCGGCGGCGGCGGc -3' miRNA: 3'- caccuCCAGCA--CA---GGCUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 154406 | 0.66 | 0.942042 |
Target: 5'- -cGGAGGcgaUCGggGUCCGAggcaagaUGGCGGCGu -3' miRNA: 3'- caCCUCC---AGCa-CAGGCU-------GCUGUCGCu -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 36225 | 0.67 | 0.933264 |
Target: 5'- -cGGAGa-CG-GUCCcgagGACGACGGCGAg -3' miRNA: 3'- caCCUCcaGCaCAGG----CUGCUGUCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 92731 | 0.67 | 0.917785 |
Target: 5'- -cGGGGGgcgCGcucgGUCCGAUGGCgccgacgacgGGCGAc -3' miRNA: 3'- caCCUCCa--GCa---CAGGCUGCUG----------UCGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 127834 | 0.66 | 0.95083 |
Target: 5'- -gGGAGGUCGU---CGGCGGCGuccgccGCGAa -3' miRNA: 3'- caCCUCCAGCAcagGCUGCUGU------CGCU- -5' |
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8946 | 3' | -56.7 | NC_002512.2 | + | 171614 | 0.66 | 0.946764 |
Target: 5'- --cGAGGUCGUcgccUUCGGgccCGACAGCGAg -3' miRNA: 3'- cacCUCCAGCAc---AGGCU---GCUGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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