miRNA display CGI


Results 61 - 80 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 184393 0.72 0.471629
Target:  5'- cGGCgUGGcCGcCGCCgGGGGGCGcUCGGCc -3'
miRNA:   3'- -CUG-GCCuGCaGCGG-CCCCUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 122095 0.72 0.471629
Target:  5'- cGCCGGACGcgagGUCGGcgcuGACGUCGGCc -3'
miRNA:   3'- cUGGCCUGCag--CGGCCc---CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 83592 0.71 0.480269
Target:  5'- cGCCGGugucgaagcaGUCGCCGGGGuuGgacaCGGCg -3'
miRNA:   3'- cUGGCCug--------CAGCGGCCCCugCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 83809 0.71 0.480269
Target:  5'- -gUCGGGCG-CGCCGGcGGCGgCGGCu -3'
miRNA:   3'- cuGGCCUGCaGCGGCCcCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 113174 0.71 0.480269
Target:  5'- -gUCGGACGU-GCCGGGGcuGCGUuguuccagagCGGCg -3'
miRNA:   3'- cuGGCCUGCAgCGGCCCC--UGCA----------GCCG- -5'
8946 5' -62.1 NC_002512.2 + 190334 0.71 0.48811
Target:  5'- cGACgGGuucgucuaccucuACGaCGaCGGGGGCGUCGGCc -3'
miRNA:   3'- -CUGgCC-------------UGCaGCgGCCCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 10427 0.71 0.488985
Target:  5'- cGACCGcGuCGUCGCCgucgggcacGGGGGCG-CGGa -3'
miRNA:   3'- -CUGGC-CuGCAGCGG---------CCCCUGCaGCCg -5'
8946 5' -62.1 NC_002512.2 + 100065 0.71 0.488985
Target:  5'- cGACgGGggccGCGg-GCCGGGGACGgagCGGUc -3'
miRNA:   3'- -CUGgCC----UGCagCGGCCCCUGCa--GCCG- -5'
8946 5' -62.1 NC_002512.2 + 129552 0.71 0.492492
Target:  5'- uGGCCGG-CGccCGCCagucccgaggcgccGGGACGUCGGCc -3'
miRNA:   3'- -CUGGCCuGCa-GCGGc-------------CCCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 188676 0.71 0.497774
Target:  5'- cGACCGcGGCgGUC-UCGGGGACGaucaCGGCg -3'
miRNA:   3'- -CUGGC-CUG-CAGcGGCCCCUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 33686 0.71 0.497774
Target:  5'- cGCCGGAgGcUCGCCaGGGACc-CGGCc -3'
miRNA:   3'- cUGGCCUgC-AGCGGcCCCUGcaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 113660 0.71 0.497774
Target:  5'- cGGCCGGccgcgaggguGCG-CGCgGGucGGACGUUGGCg -3'
miRNA:   3'- -CUGGCC----------UGCaGCGgCC--CCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 219411 0.71 0.506633
Target:  5'- cGCCGcGACGcccaCGCCcGGGGCGgCGGCg -3'
miRNA:   3'- cUGGC-CUGCa---GCGGcCCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 8194 0.71 0.506633
Target:  5'- aGGCCGaGCGUCGCCGGGcgGGUGUCcGCg -3'
miRNA:   3'- -CUGGCcUGCAGCGGCCC--CUGCAGcCG- -5'
8946 5' -62.1 NC_002512.2 + 90934 0.71 0.506633
Target:  5'- --aCGGGCG-CGaCCGGGGcguGCGUgGGCg -3'
miRNA:   3'- cugGCCUGCaGC-GGCCCC---UGCAgCCG- -5'
8946 5' -62.1 NC_002512.2 + 118657 0.71 0.515559
Target:  5'- cGGCU-GACG--GCCGGGGACGUCaGCa -3'
miRNA:   3'- -CUGGcCUGCagCGGCCCCUGCAGcCG- -5'
8946 5' -62.1 NC_002512.2 + 226758 0.71 0.515559
Target:  5'- cGGCCGGACGaCGCggaGGgcgaGGACGUCucgGGCg -3'
miRNA:   3'- -CUGGCCUGCaGCGg--CC----CCUGCAG---CCG- -5'
8946 5' -62.1 NC_002512.2 + 217804 0.71 0.519148
Target:  5'- gGAUCGG-CGUCGCCgucccgaucgucgacGGcGGGCGguUCGGCa -3'
miRNA:   3'- -CUGGCCuGCAGCGG---------------CC-CCUGC--AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 43145 0.71 0.524548
Target:  5'- uGCCGGGCGUggUGCCcGcGACGUUGGCc -3'
miRNA:   3'- cUGGCCUGCA--GCGGcCcCUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 217293 0.71 0.524548
Target:  5'- --gCGGACcgcgCGCCGGGaGAUGaUCGGCu -3'
miRNA:   3'- cugGCCUGca--GCGGCCC-CUGC-AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.